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  5. Solyc01g094560

Solyc01g094560


Description : 60S ribosomal protein L36 (AHRD V3.3 *** K4AZJ7_SOLLC)


Gene families : OG_42_0001685 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001685_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Solanum release: Solyc01g094560
Cluster HCCA clusters: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
267958 No alias Ribosomal protein L36e family protein 0.04 Orthogroups_2024-Update
439710 No alias Ribosomal protein L36e family protein 0.03 Orthogroups_2024-Update
Bradi2g23260 No alias Ribosomal protein L36e family protein 0.02 Orthogroups_2024-Update
Cre12.g484050 No alias Ribosomal protein L36e family protein 0.04 Orthogroups_2024-Update
Kfl00110_0150 kfl00110_0150_v1.1 (at2g37600 : 143.0) Ribosomal protein L36e family... 0.02 Orthogroups_2024-Update
PSME_00032530-RA No alias (at3g53740 : 141.0) Ribosomal protein L36e family... 0.03 Orthogroups_2024-Update
Pp1s249_65V6 No alias 60s ribosomal protein l36-2 0.03 Orthogroups_2024-Update
Pp1s84_102V6 No alias 60s ribosomal protein l36-2 0.04 Orthogroups_2024-Update
Seita.3G217000.1 No alias component *(eL36) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sopen01g038370 No alias Ribosomal protein L36e 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
CC GO:0030014 CCR4-NOT complex IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000509 Ribosomal_L36e 8 101
No external refs found!