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  5. Cre16.g649600

Cre16.g649600


Description : pumilio 23


Gene families : OG_42_0007710 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007710_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre16.g649600
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
At1g72320 No alias Pumilio homolog 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9C552] 0.02 Orthogroups_2024-Update
Bradi4g25530 No alias pumilio 23 0.04 Orthogroups_2024-Update
Brara.G03119.1 No alias rRNA biogenesis auxiliary factor *(APUM23) 0.07 Orthogroups_2024-Update
GRMZM2G449779 No alias pumilio 23 0.01 Orthogroups_2024-Update
Glyma.03G263200 No alias pumilio 23 0.06 Orthogroups_2024-Update
HORVU6Hr1G013720.4 No alias rRNA biogenesis auxiliary factor *(APUM23) 0.02 Orthogroups_2024-Update
Kfl00115_0200 kfl00115_0200_v1.1 (at1g72320 : 276.0) Encodes a member of the Arabidopsis... 0.02 Orthogroups_2024-Update
MA_10434208g0010 No alias (at1g72320 : 221.0) Encodes a member of the Arabidopsis... 0.01 Orthogroups_2024-Update
Potri.003G073000 No alias pumilio 23 0.07 Orthogroups_2024-Update
Pp1s293_80V6 No alias T10D10.21; pumilio/Puf RNA-binding domain-containing... 0.09 Orthogroups_2024-Update
evm.model.tig00021234.17 No alias no hits & (original description: no original description) 0.14 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 135 157
No external refs found!