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  5. Cre17.g727700

Cre17.g727700


Description : DEAD box RNA helicase (RH3)


Gene families : OG_42_0000844 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre17.g727700
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
At3g22310 No alias DEAD-box ATP-dependent RNA helicase 9, mitochondrial... 0.02 Orthogroups_2024-Update
Bradi1g03180 No alias DEAD box RNA helicase (RH3) 0.02 Orthogroups_2024-Update
Bradi4g35490 No alias DEAD box RNA helicase (PRH75) 0.02 Orthogroups_2024-Update
Brara.A02729.1 No alias group-II intron splicing RNA helicase *(PMH) 0.04 Orthogroups_2024-Update
Brara.B03801.1 No alias Unknown function 0.08 Orthogroups_2024-Update
Brara.E01722.1 No alias group-II intron splicing RNA helicase *(PMH) 0.02 Orthogroups_2024-Update
Brara.I00503.1 No alias group-II intron splicing RNA helicase *(RH3) 0.02 Orthogroups_2024-Update
Brara.I00682.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G001784 No alias DEAD box RNA helicase (PRH75) 0.01 Orthogroups_2024-Update
Glyma.14G033400 No alias putative mitochondrial RNA helicase 2 0.03 Orthogroups_2024-Update
LOC_Os09g34910 No alias DEAD-box ATP-dependent RNA helicase 7, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os12g41715 No alias DEAD-box ATP-dependent RNA helicase, putative, expressed 0.01 Orthogroups_2024-Update
PSME_00013820-RA No alias (q41382|rh7_spiol : 651.0) DEAD-box ATP-dependent RNA... 0.02 Orthogroups_2024-Update
PSME_00014810-RA No alias (q41382|rh7_spiol : 645.0) DEAD-box ATP-dependent RNA... 0.01 Orthogroups_2024-Update
Potri.006G024100 No alias putative mitochondrial RNA helicase 2 0.02 Orthogroups_2024-Update
Potri.016G023100 No alias putative mitochondrial RNA helicase 2 0.03 Orthogroups_2024-Update
Seita.2G278900.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Seita.3G386700.1 No alias group-II intron splicing RNA helicase *(PMH) 0.06 Orthogroups_2024-Update
Sobic.002G268100.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.008G165900.1 No alias group-II intron splicing RNA helicase *(PMH) 0.06 Orthogroups_2024-Update
Solyc06g035460 No alias No description available 0.01 Orthogroups_2024-Update
Solyc12g006320 No alias RNA helicase DEAD35 0.02 Orthogroups_2024-Update
Sopen03g003010 No alias DEAD/DEAH box helicase 0.02 Orthogroups_2024-Update
evm.model.contig_3385.6 No alias (at5g26742 : 365.0) embryo defective 1138 (emb1138);... 0.03 Orthogroups_2024-Update
evm.model.contig_3450.5 No alias (q41382|rh7_spiol : 422.0) DEAD-box ATP-dependent RNA... 0.05 Orthogroups_2024-Update
evm.model.tig00000093.151 No alias (at5g26742 : 291.0) embryo defective 1138 (emb1138);... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
BP GO:0000469 cleavage involved in rRNA processing IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Predicted GO
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 106 280
IPR001650 Helicase_C 331 430
No external refs found!