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  5. MA_10196363g0010

MA_10196363g0010


Description : (p59287|cass_ricco : 245.0) Casbene synthase, chloroplast precursor (EC 4.2.3.8) - Ricinus communis (Castor bean) & (at4g16730 : 236.0) In the Col ecotype, no functional protein is encoded at this locus due to the presence of a two-base (AT) insertion 184 nucleotides downstream of the start codon leading to a frame shift and premature translational termination. However, in the Ws ecotype, a functional terpene synthase that localizes to the chloroplast is encoded at this locus. It can catalyze the synthesis of (E)-beta-ocimene and (E,E)-alpha farnesene in vitro, but, it has more activity as an (E)-beta-ocimene synthase activity in vivo. This may reflect the greater availability of the GPP precursor of (E)-beta-ocimene than of the FPP precursor of (E,E)-alpha-farnesene in the chloroplasts where the Ws TPS02 is present.; terpene synthase 02 (TPS02); INVOLVED IN: metabolic process; EXPRESSED IN: sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase 03 (TAIR:AT4G16740.1); Has 1736 Blast hits to 1706 proteins in 177 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1730; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (reliability: 472.0) & (original description: no original description)


Gene families : OG_42_0000258 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000258_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_10196363g0010
Cluster HCCA clusters: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
407280 No alias Terpenoid cyclases/Protein prenyltransferases superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G321100 No alias terpene synthase 03 0.03 Orthogroups_2024-Update
PSME_00003265-RA No alias (at4g02780 : 372.0) Catalyzes the conversion of... 0.03 Orthogroups_2024-Update
PSME_00003535-RA No alias (p59287|cass_ricco : 266.0) Casbene synthase,... 0.04 Orthogroups_2024-Update
PSME_00010279-RA No alias (at4g02780 : 364.0) Catalyzes the conversion of... 0.05 Orthogroups_2024-Update
PSME_00011600-RA No alias (p59287|cass_ricco : 229.0) Casbene synthase,... 0.04 Orthogroups_2024-Update
PSME_00012291-RA No alias (p93665|dcs1_goshi : 240.0) (+)-delta-cadinene synthase... 0.04 Orthogroups_2024-Update
PSME_00013124-RA No alias (p93665|dcs1_goshi : 234.0) (+)-delta-cadinene synthase... 0.03 Orthogroups_2024-Update
PSME_00025552-RA No alias (p59287|cass_ricco : 251.0) Casbene synthase,... 0.04 Orthogroups_2024-Update
PSME_00027421-RA No alias (o04408|ksa_pea : 118.0) Ent-kaurene synthase A,... 0.04 Orthogroups_2024-Update
PSME_00028694-RA No alias (p93665|dcs1_goshi : 181.0) (+)-delta-cadinene synthase... 0.03 Orthogroups_2024-Update
PSME_00029104-RA No alias (p59287|cass_ricco : 216.0) Casbene synthase,... 0.06 Orthogroups_2024-Update
PSME_00030854-RA No alias (p59287|cass_ricco : 223.0) Casbene synthase,... 0.04 Orthogroups_2024-Update
PSME_00032144-RA No alias (at4g16740 : 225.0) Encodes an (E,E)-alpha-farnesene... 0.04 Orthogroups_2024-Update
PSME_00032510-RA No alias (at4g16730 : 184.0) In the Col ecotype, no functional... 0.04 Orthogroups_2024-Update
PSME_00034149-RA No alias (at4g16730 : 254.0) In the Col ecotype, no functional... 0.04 Orthogroups_2024-Update
PSME_00039853-RA No alias (at4g02780 : 169.0) Catalyzes the conversion of... 0.04 Orthogroups_2024-Update
Solyc01g105850 No alias (E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN)%3B... 0.03 Orthogroups_2024-Update
Solyc01g105900 No alias Beta myrcene/limonene synthase (AHRD V3.3 *** G1JUH4_SOLLC) 0.03 Orthogroups_2024-Update
Solyc01g105920 No alias (E)-beta-ocimene synthase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA InterProScan predictions
MF GO:0010333 terpene synthase activity IEA InterProScan predictions
MF GO:0016829 lyase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0030410 nicotianamine synthase activity IEP Predicted GO
BP GO:0030417 nicotianamine metabolic process IEP Predicted GO
BP GO:0030418 nicotianamine biosynthetic process IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
BP GO:0072351 tricarboxylic acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001906 Terpene_synth_N 81 257
IPR005630 Terpene_synthase_metal-bd 297 559
No external refs found!