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MA_102570g0010


Description : (at1g75560 : 298.0) zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: cold shock domain protein 1 (TAIR:AT4G36020.1); Has 19425 Blast hits to 13089 proteins in 377 species: Archae - 0; Bacteria - 14; Metazoa - 2237; Fungi - 1342; Plants - 858; Viruses - 14254; Other Eukaryotes - 720 (source: NCBI BLink). & (reliability: 596.0) & (original description: no original description)


Gene families : OG_42_0005846 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005846_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_102570g0010
Cluster HCCA clusters: Cluster_216


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006098 pentose-phosphate shunt IEP Predicted GO
BP GO:0006733 oxidoreduction coenzyme metabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0019362 pyridine nucleotide metabolic process IEP Predicted GO
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predicted GO
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
BP GO:0051156 glucose 6-phosphate metabolic process IEP Predicted GO
BP GO:0072524 pyridine-containing compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 98 113
IPR001878 Znf_CCHC 222 237
IPR001878 Znf_CCHC 60 75
IPR001878 Znf_CCHC 162 178
IPR001878 Znf_CCHC 143 159
IPR001878 Znf_CCHC 202 217
IPR001878 Znf_CCHC 80 94
IPR001878 Znf_CCHC 41 57
No external refs found!