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  5. MA_10286643g0010

MA_10286643g0010


Description : (at3g22470 : 237.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 71386 Blast hits to 15586 proteins in 313 species: Archae - 4; Bacteria - 76; Metazoa - 1075; Fungi - 1368; Plants - 66381; Viruses - 0; Other Eukaryotes - 2482 (source: NCBI BLink). & (q76c99|rf1_orysa : 227.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 444.0) & (original description: no original description)


Gene families : OG_42_0002840 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002840_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_10286643g0010
Cluster HCCA clusters: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
MA_179371g0010 No alias (at1g05670 : 150.0) Pentatricopeptide repeat (PPR-like)... 0.03 Orthogroups_2024-Update
MA_4827827g0010 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
CC GO:0031226 intrinsic component of plasma membrane IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
CC GO:0046658 anchored component of plasma membrane IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 4 36
IPR002885 Pentatricopeptide_repeat 179 200
IPR002885 Pentatricopeptide_repeat 331 360
IPR002885 Pentatricopeptide_repeat 262 311
IPR002885 Pentatricopeptide_repeat 370 416
IPR002885 Pentatricopeptide_repeat 43 92
IPR002885 Pentatricopeptide_repeat 207 256
No external refs found!