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- MA_10426889g0010
MA_10426889g0010
Description : (o22567|dxs_orysa : 974.0) Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor (EC 2.2.1.7) (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) - Oryza sativa (Rice) & (at4g15560 : 965.0) Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis; CLOROPLASTOS ALTERADOS 1 (CLA1); FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate synthase activity; INVOLVED IN: chlorophyll biosynthetic process, response to light stimulus, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, N-terminal (InterPro:IPR005474), Transketolase, C-terminal (InterPro:IPR005476), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475), Transketolase binding site (InterPro:IPR020826), Transketolase-like, C-terminal (InterPro:IPR015941), Deoxyxylulose-5-phosphate synthase (InterPro:IPR005477), Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: 1-deoxy-D-xylulose 5-phosphate synthase 1 (TAIR:AT3G21500.2); Has 24450 Blast hits to 24392 proteins in 2940 species: Archae - 267; Bacteria - 15281; Metazoa - 526; Fungi - 278; Plants - 446; Viruses - 0; Other Eukaryotes - 7652 (source: NCBI BLink). & (reliability: 1930.0) & (original description: no original description)
Expression Profile
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
| Type | Description | Actions |
| Neighborhood | Picea release: MA_10426889g0010 | |
| Cluster | HCCA clusters: Cluster_162 | |
Expression Context Conservation (ECC)
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
| 143534 | No alias | Deoxyxylulose-5-phosphate synthase | 0.03 | Orthogroups_2024-Update | |
| A4A49_00529 | No alias | putative 1-deoxy-d-xylulose-5-phosphate synthase 2, chloroplastic | 0.04 | Orthogroups_2024-Update | |
| Glyma.07G252600 | No alias | Deoxyxylulose-5-phosphate synthase | 0.05 | Orthogroups_2024-Update | |
| Glyma.18G148700 | No alias | Deoxyxylulose-5-phosphate synthase | 0.02 | Orthogroups_2024-Update | |
| HORVU1Hr1G084900.9 | No alias | 1-deoxy-D-xylulose 5-phosphate synthase *(DXS) & EC_2.2... | 0.05 | Orthogroups_2024-Update | |
| LOC_Os06g05100 | No alias | transketolase, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| PSME_00009546-RA | No alias | (o22567|dxs_orysa : 1008.0) Probable... | 0.05 | Orthogroups_2024-Update | |
| PSME_00036778-RA | No alias | (o22567|dxs_orysa : 1011.0) Probable... | 0.08 | Orthogroups_2024-Update | |
Functional Annotation
| Type | GO Term | Name | Evidence | Source |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0003824 | catalytic activity | None | Extended |
| BP | GO:0006629 | lipid metabolic process | None | Extended |
| BP | GO:0006720 | isoprenoid metabolic process | None | Extended |
| BP | GO:0006721 | terpenoid metabolic process | None | Extended |
| BP | GO:0008150 | biological_process | None | Extended |
| BP | GO:0008152 | metabolic process | None | Extended |
| BP | GO:0008299 | isoprenoid biosynthetic process | None | Extended |
| BP | GO:0008610 | lipid biosynthetic process | None | Extended |
| MF | GO:0008661 | 1-deoxy-D-xylulose-5-phosphate synthase activity | IEA | InterProScan predictions |
| BP | GO:0009058 | biosynthetic process | None | Extended |
| BP | GO:0009987 | cellular process | None | Extended |
| BP | GO:0016114 | terpenoid biosynthetic process | IEA | InterProScan predictions |
| MF | GO:0016740 | transferase activity | None | Extended |
| MF | GO:0016744 | transferase activity, transferring aldehyde or ketonic groups | None | Extended |
| BP | GO:0044237 | cellular metabolic process | None | Extended |
| BP | GO:0044238 | primary metabolic process | None | Extended |
| BP | GO:0044249 | cellular biosynthetic process | None | Extended |
| BP | GO:0044255 | cellular lipid metabolic process | None | Extended |
| BP | GO:0071704 | organic substance metabolic process | None | Extended |
| BP | GO:1901576 | organic substance biosynthetic process | None | Extended |
| Type | GO Term | Name | Evidence | Source |
| BP | GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity | IEP | Predicted GO |
| BP | GO:0001932 | regulation of protein phosphorylation | IEP | Predicted GO |
| MF | GO:0005506 | iron ion binding | IEP | Predicted GO |
| MF | GO:0016491 | oxidoreductase activity | IEP | Predicted GO |
| MF | GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | IEP | Predicted GO |
| MF | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | IEP | Predicted GO |
| MF | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | IEP | Predicted GO |
| BP | GO:0019220 | regulation of phosphate metabolic process | IEP | Predicted GO |
| MF | GO:0019900 | kinase binding | IEP | Predicted GO |
| MF | GO:0019901 | protein kinase binding | IEP | Predicted GO |
| BP | GO:0031399 | regulation of protein modification process | IEP | Predicted GO |
| BP | GO:0032268 | regulation of cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0042325 | regulation of phosphorylation | IEP | Predicted GO |
| BP | GO:0043549 | regulation of kinase activity | IEP | Predicted GO |
| BP | GO:0045859 | regulation of protein kinase activity | IEP | Predicted GO |
| MF | GO:0046983 | protein dimerization activity | IEP | Predicted GO |
| BP | GO:0050790 | regulation of catalytic activity | IEP | Predicted GO |
| BP | GO:0051174 | regulation of phosphorus metabolic process | IEP | Predicted GO |
| MF | GO:0051213 | dioxygenase activity | IEP | Predicted GO |
| BP | GO:0051246 | regulation of protein metabolic process | IEP | Predicted GO |
| BP | GO:0051338 | regulation of transferase activity | IEP | Predicted GO |
| BP | GO:0051726 | regulation of cell cycle | IEP | Predicted GO |
| BP | GO:0055114 | oxidation-reduction process | IEP | Predicted GO |
| BP | GO:0065009 | regulation of molecular function | IEP | Predicted GO |
| BP | GO:0071900 | regulation of protein serine/threonine kinase activity | IEP | Predicted GO |
| BP | GO:1904029 | regulation of cyclin-dependent protein kinase activity | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
| IPR033248 | Transketolase_C | 561 | 684 |
| IPR005477 | Dxylulose-5-P_synthase | 96 | 381 |
| IPR005475 | Transketolase-like_Pyr-bd | 418 | 560 |
