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  5. Solyc01g095160

Solyc01g095160


Description : Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *** AT4G37170.1)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g095160
Cluster HCCA clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
90480 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
97289 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
At2g01510 No alias Pentatricopeptide repeat-containing protein At2g01510,... 0.02 Orthogroups_2024-Update
At3g14330 No alias Pentatricopeptide repeat-containing protein At3g14330... 0.03 Orthogroups_2024-Update
Bradi1g27320 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.C02021.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.F01619.1 No alias RNA editing factor *(ECD1) 0.03 Orthogroups_2024-Update
Brara.F03480.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Brara.F03861.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.I02594.1 No alias Unknown function 0.01 Orthogroups_2024-Update
GRMZM2G020008 No alias mitochondrial RNAediting factor 1 0.03 Orthogroups_2024-Update
GRMZM2G031588 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G060337 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G073017 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G073460 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G163396 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G175253 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G177715 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G331779 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G456114 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G180600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.01G228000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.02G071600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G227300 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.05G125500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G322500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G173900 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G313200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.15G084700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.16G161800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU0Hr1G015970.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU2Hr1G012210.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU2Hr1G027440.18 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU2Hr1G124480.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G085150.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU4Hr1G009150.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU4Hr1G014730.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os05g30710 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g39090 No alias pentatricopeptide repeat domain containing protein,... 0.03 Orthogroups_2024-Update
MA_40997g0010 No alias (at4g02750 : 642.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00013107-RA No alias (at4g13650 : 657.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00014659-RA No alias (at1g11290 : 712.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00017651-RA No alias (at4g13650 : 592.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00034399-RA No alias (at4g33170 : 426.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00036148-RA No alias (at2g22070 : 583.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
Potri.001G217600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.001G258500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.002G175900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.004G043400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.004G059400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.007G022466 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.016G053500 No alias mitochondrial RNAediting factor 1 0.03 Orthogroups_2024-Update
Potri.018G067500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.6G051400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G312700.1 No alias RNA editing factor *(MEF25) 0.02 Orthogroups_2024-Update
Sobic.001G347100.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G436600.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G240900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G358900.3 No alias RNA editing factor *(OTP90) 0.03 Orthogroups_2024-Update
Sobic.002G384800.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Sobic.002G385200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G290400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G238700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G241200.3 No alias RNA editing factor *(ECB2/VAC1) 0.03 Orthogroups_2024-Update
Sobic.010G066900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g010510 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen01g002910 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen01g006160 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen01g033110 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen01g037380 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen01g038950 No alias PPR repeat 0.06 Orthogroups_2024-Update
Sopen01g052200 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen02g024180 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen02g033370 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen02g039140 No alias PPR repeat 0.07 Orthogroups_2024-Update
Sopen03g002990 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen03g003770 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen03g011150 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen03g024500 No alias PPR repeat 0.05 Orthogroups_2024-Update
Sopen03g034780 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen03g038010 No alias PPR repeat 0.05 Orthogroups_2024-Update
Sopen04g008620 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen04g026710 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen06g024560 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen06g035950 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen07g001950 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen07g017190 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen07g022420 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen09g004700 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen09g027460 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen10g003810 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen10g004410 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen11g001900 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen11g001910 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen11g002630 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen11g009180 No alias PPR repeat 0.05 Orthogroups_2024-Update
Sopen11g026910 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen12g021390 No alias PPR repeat 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0051301 cell division IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1905354 exoribonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 561 685
IPR002885 Pentatricopeptide_repeat 286 334
IPR002885 Pentatricopeptide_repeat 387 434
IPR002885 Pentatricopeptide_repeat 362 384
IPR002885 Pentatricopeptide_repeat 528 557
IPR002885 Pentatricopeptide_repeat 157 184
IPR002885 Pentatricopeptide_repeat 463 487
IPR002885 Pentatricopeptide_repeat 128 154
IPR002885 Pentatricopeptide_repeat 187 215
No external refs found!