Description : Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** U7E1K1_POPTR)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Solanum release: Solyc10g007940 | |
Cluster | HCCA clusters: Cluster_94 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
182822 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
A4A49_23672 | No alias | pentatricopeptide repeat-containing protein, mitochondrial | 0.03 | Orthogroups_2024-Update | |
At2g34400 | No alias | Pentatricopeptide repeat-containing protein At2g34400... | 0.03 | Orthogroups_2024-Update | |
At3g14330 | No alias | Pentatricopeptide repeat-containing protein At3g14330... | 0.03 | Orthogroups_2024-Update | |
At4g25270 | No alias | Pentatricopeptide repeat-containing protein At4g25270,... | 0.03 | Orthogroups_2024-Update | |
At5g66520 | No alias | Pentatricopeptide repeat-containing protein At5g66520... | 0.02 | Orthogroups_2024-Update | |
Bradi1g14160 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi1g59070 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi2g62320 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi4g22520 | No alias | mitochondrial editing factor 22 | 0.03 | Orthogroups_2024-Update | |
Brara.G03498.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
GRMZM2G099875 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.01G234100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.09G209700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.14G194400 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.16G026000 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.04 | Orthogroups_2024-Update | |
Glyma.16G221300 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.17G117001 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU0Hr1G018170.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
HORVU1Hr1G063370.1 | No alias | RNA editing factor *(MEF32) | 0.03 | Orthogroups_2024-Update | |
HORVU3Hr1G080120.11 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
HORVU4Hr1G064880.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G047290.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
HORVU7Hr1G038460.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
LOC_Os02g46980 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os04g39410 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_141731g0010 | No alias | (at4g02750 : 772.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00004102-RA | No alias | (at4g02750 : 508.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
PSME_00010496-RA | No alias | (at2g22070 : 627.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00032006-RA | No alias | (at2g13600 : 367.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
PSME_00033354-RA | No alias | (at3g53360 : 430.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
Potri.006G252400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.014G029500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Seita.2G047600.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.3G006500.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.002G007000.2 | No alias | RNA editing factor *(ELI1) | 0.03 | Orthogroups_2024-Update | |
Sobic.004G246800.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.006G146900.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.006G153300.2 | No alias | RNA editing factor *(MEF21) | 0.02 | Orthogroups_2024-Update | |
Sobic.009G250700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.010G153600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Solyc02g069500 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc02g070710 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
Sopen01g041720 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update | |
Sopen02g026530 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update | |
Sopen05g007940 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
MF | GO:0003905 | alkylbase DNA N-glycosylase activity | IEP | Predicted GO |
MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006281 | DNA repair | IEP | Predicted GO |
BP | GO:0006284 | base-excision repair | IEP | Predicted GO |
BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
BP | GO:0006553 | lysine metabolic process | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Predicted GO |
MF | GO:0008170 | N-methyltransferase activity | IEP | Predicted GO |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Predicted GO |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | Predicted GO |
MF | GO:0008725 | DNA-3-methyladenine glycosylase activity | IEP | Predicted GO |
MF | GO:0008839 | 4-hydroxy-tetrahydrodipicolinate reductase | IEP | Predicted GO |
BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | Predicted GO |
BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0009085 | lysine biosynthetic process | IEP | Predicted GO |
BP | GO:0009089 | lysine biosynthetic process via diaminopimelate | IEP | Predicted GO |
BP | GO:0009119 | ribonucleoside metabolic process | IEP | Predicted GO |
CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Predicted GO |
CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
BP | GO:0015969 | guanosine tetraphosphate metabolic process | IEP | Predicted GO |
BP | GO:0015988 | energy coupled proton transmembrane transport, against electrochemical gradient | IEP | Predicted GO |
BP | GO:0015991 | ATP hydrolysis coupled proton transport | IEP | Predicted GO |
MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Predicted GO |
MF | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Predicted GO |
MF | GO:0019104 | DNA N-glycosylase activity | IEP | Predicted GO |
CC | GO:0019898 | extrinsic component of membrane | IEP | Predicted GO |
MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
BP | GO:0033554 | cellular response to stress | IEP | Predicted GO |
BP | GO:0033865 | nucleoside bisphosphate metabolic process | IEP | Predicted GO |
BP | GO:0033875 | ribonucleoside bisphosphate metabolic process | IEP | Predicted GO |
BP | GO:0034032 | purine nucleoside bisphosphate metabolic process | IEP | Predicted GO |
BP | GO:0034035 | purine ribonucleoside bisphosphate metabolic process | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0042278 | purine nucleoside metabolic process | IEP | Predicted GO |
CC | GO:0043190 | ATP-binding cassette (ABC) transporter complex | IEP | Predicted GO |
BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | Predicted GO |
MF | GO:0043733 | DNA-3-methylbase glycosylase activity | IEP | Predicted GO |
CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
CC | GO:0044459 | plasma membrane part | IEP | Predicted GO |
BP | GO:0046128 | purine ribonucleoside metabolic process | IEP | Predicted GO |
BP | GO:0046451 | diaminopimelate metabolic process | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
BP | GO:0051716 | cellular response to stimulus | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
BP | GO:0090662 | ATP hydrolysis coupled transmembrane transport | IEP | Predicted GO |
CC | GO:0098533 | ATPase dependent transmembrane transport complex | IEP | Predicted GO |
CC | GO:0098796 | membrane protein complex | IEP | Predicted GO |
CC | GO:0098797 | plasma membrane protein complex | IEP | Predicted GO |
BP | GO:0099131 | ATP hydrolysis coupled ion transmembrane transport | IEP | Predicted GO |
BP | GO:0099132 | ATP hydrolysis coupled cation transmembrane transport | IEP | Predicted GO |
BP | GO:1901068 | guanosine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
CC | GO:1902494 | catalytic complex | IEP | Predicted GO |
CC | GO:1902495 | transmembrane transporter complex | IEP | Predicted GO |
CC | GO:1904949 | ATPase complex | IEP | Predicted GO |
CC | GO:1990204 | oxidoreductase complex | IEP | Predicted GO |
CC | GO:1990351 | transporter complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 572 | 595 |
IPR002885 | Pentatricopeptide_repeat | 165 | 194 |
IPR002885 | Pentatricopeptide_repeat | 370 | 393 |
IPR002885 | Pentatricopeptide_repeat | 195 | 225 |
IPR002885 | Pentatricopeptide_repeat | 297 | 323 |
IPR032867 | DYW_dom | 670 | 794 |
IPR002885 | Pentatricopeptide_repeat | 395 | 442 |
IPR002885 | Pentatricopeptide_repeat | 93 | 138 |
IPR002885 | Pentatricopeptide_repeat | 497 | 543 |
No external refs found! |