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  5. MA_10428335g0020

MA_10428335g0020


Description : (at3g19950 : 167.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G55530.1); Has 11106 Blast hits to 11075 proteins in 297 species: Archae - 0; Bacteria - 6; Metazoa - 2940; Fungi - 1152; Plants - 5266; Viruses - 73; Other Eukaryotes - 1669 (source: NCBI BLink). & (reliability: 334.0) & (original description: no original description)


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_10428335g0020
Cluster HCCA clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
A4A49_23663 No alias e3 ubiquitin-protein ligase cip8 0.02 Orthogroups_2024-Update
A4A49_36495 No alias e3 ubiquitin-protein ligase aip2 0.02 Orthogroups_2024-Update
A4A49_41488 No alias e3 ubiquitin-protein ligase rduf1 0.04 Orthogroups_2024-Update
At1g26800 No alias E3 ubiquitin-protein ligase MPSR1... 0.03 Orthogroups_2024-Update
At3g13228 No alias RING/U-box superfamily protein... 0.04 Orthogroups_2024-Update
At3g60080 No alias At3g60080 [Source:UniProtKB/TrEMBL;Acc:Q9M1D5] 0.04 Orthogroups_2024-Update
Brara.C03342.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.I04047.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I05006.1 No alias E3 ubiquitin ligase *(SNIPER) 0.04 Orthogroups_2024-Update
Cre10.g422050 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G021480 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G157855 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G251600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G034800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os12g04450 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
PSME_00026521-RA No alias (at3g19950 : 152.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
Seita.6G190900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G172700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.005G165900.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Solyc10g045180 No alias E3 ubiquitin-protein ligase (AHRD V3.3 --* A0A0F7G5V7_9ROSI) 0.04 Orthogroups_2024-Update
evm.model.contig_2287.2 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 144 186
No external refs found!