Solyc10g008910


Description : Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA)


Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc10g008910
Cluster HCCA clusters: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
103546 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
438193 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
78992 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
A4A49_56508 No alias histone h3.2 0.04 Orthogroups_2024-Update
A4A49_57080 No alias histone h3.2 0.04 Orthogroups_2024-Update
A4A49_61103 No alias histone h3.2 0.04 Orthogroups_2024-Update
At5g65360 No alias Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20] 0.04 Orthogroups_2024-Update
Bradi1g49997 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Brara.B00354.1 No alias histone *(H3) 0.12 Orthogroups_2024-Update
Brara.B03430.1 No alias histone *(H3) 0.07 Orthogroups_2024-Update
Brara.C00416.1 No alias histone *(H3) 0.06 Orthogroups_2024-Update
Brara.D00649.1 No alias histone *(H3) 0.08 Orthogroups_2024-Update
Brara.H02834.1 No alias histone *(H3) 0.08 Orthogroups_2024-Update
Brara.I00815.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Brara.I01745.1 No alias histone *(H3) 0.07 Orthogroups_2024-Update
Brara.J02314.1 No alias histone *(H3) 0.08 Orthogroups_2024-Update
Cre06.g264650 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g265250 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g267950 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g274000 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g274850 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g276600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g276850 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre12.g504650 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g504800 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g505500 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g506300 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre12.g506500 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre16.g661450 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre17.g708150 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre17.g708700 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre17.g709050 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G078314 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
GRMZM2G130079 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G171387 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G179005 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G418258 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.05G188600 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.05G188700 No alias Histone superfamily protein 0.07 Orthogroups_2024-Update
Glyma.07G202500 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.08G227400 No alias Histone superfamily protein 0.08 Orthogroups_2024-Update
Glyma.08G245000 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G130900 No alias Histone superfamily protein 0.08 Orthogroups_2024-Update
Glyma.12G055200 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G173100 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.13G342000 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.15G032300 No alias Histone superfamily protein 0.1 Orthogroups_2024-Update
Glyma.15G222200 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.18G266200 No alias Histone superfamily protein 0.09 Orthogroups_2024-Update
HORVU1Hr1G058490.4 No alias histone *(H3) 0.03 Orthogroups_2024-Update
HORVU2Hr1G090210.1 No alias histone *(H3) 0.02 Orthogroups_2024-Update
HORVU4Hr1G073150.1 No alias histone *(H3) 0.04 Orthogroups_2024-Update
HORVU6Hr1G031580.1 No alias histone *(H3) 0.02 Orthogroups_2024-Update
HORVU7Hr1G012820.2 No alias histone *(H3) 0.04 Orthogroups_2024-Update
HORVU7Hr1G025200.1 No alias histone *(H3) 0.04 Orthogroups_2024-Update
HORVU7Hr1G033030.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Kfl00053_0050 kfl00053_0050_v1.1 (p08437|h3_volca : 147.0) Histone H3 - Volvox carteri &... 0.05 Orthogroups_2024-Update
Kfl00240_g18 kfl00240_g18_v1.1 (at5g10980 : 254.0) Histone superfamily protein;... 0.02 Orthogroups_2024-Update
Kfl00417_0090 kfl00417_0090_v1.1 (at5g10980 : 254.0) Histone superfamily protein;... 0.01 Orthogroups_2024-Update
MA_350032g0010 No alias (at5g10980 : 266.0) Histone superfamily protein;... 0.02 Orthogroups_2024-Update
MA_56411g0010 No alias (at5g65360 : 262.0) Histone superfamily protein;... 0.06 Orthogroups_2024-Update
MA_74555g0010 No alias (at5g65360 : 127.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update
Mp3g07730.1 No alias histone (H3) 0.07 Orthogroups_2024-Update
Mp7g10730.1 No alias histone (H3) 0.02 Orthogroups_2024-Update
Mp7g16200.1 No alias histone (H3) 0.04 Orthogroups_2024-Update
Mp7g18030.1 No alias histone (H3) 0.08 Orthogroups_2024-Update
Pp1s12_93V6 No alias histone h3 0.02 Orthogroups_2024-Update
Seita.3G227400.1 No alias histone *(H3) 0.04 Orthogroups_2024-Update
Seita.4G066000.1 No alias histone *(H3) 0.04 Orthogroups_2024-Update
Seita.7G095500.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Sobic.004G170500.2 No alias histone *(H3) 0.04 Orthogroups_2024-Update
Sobic.006G081800.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Sopen00g011880 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen01g030620 No alias Core histone H2A/H2B/H3/H4 0.07 Orthogroups_2024-Update
Sopen01g030790 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen01g032420 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen01g033540 No alias Core histone H2A/H2B/H3/H4 0.14 Orthogroups_2024-Update
Sopen01g033560 No alias Core histone H2A/H2B/H3/H4 0.08 Orthogroups_2024-Update
Sopen01g033790 No alias Core histone H2A/H2B/H3/H4 0.07 Orthogroups_2024-Update
Sopen01g033830 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
Sopen02g022390 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
Sopen10g004700 No alias Core histone H2A/H2B/H3/H4 0.1 Orthogroups_2024-Update
Sopen12g029140 No alias Core histone H2A/H2B/H3/H4 0.13 Orthogroups_2024-Update
evm.model.contig_2255.2 No alias (at5g10980 : 218.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
CC GO:0000796 condensin complex IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006323 DNA packaging IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
BP GO:0007076 mitotic chromosome condensation IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0030261 chromosome condensation IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0043138 3'-5' DNA helicase activity IEP Predicted GO
MF GO:0043140 ATP-dependent 3'-5' DNA helicase activity IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!