Description : (at5g14320 : 217.0) Ribosomal protein S13/S18 family; FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleic acid binding; INVOLVED IN: translation; LOCATED IN: small ribosomal subunit, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: Ribosomal protein S13/S18 family (TAIR:AT1G77750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q8lpw2|rt13_soybn : 115.0) Small ribosomal subunit protein S13, mitochondrial precursor - Glycine max (Soybean) & (reliability: 434.0) & (original description: no original description)
Gene families : OG_42_0004280 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004280_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_10431241g0010 | |
Cluster | HCCA clusters: Cluster_3 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_22126 | No alias | 30s ribosomal protein s13, chloroplastic | 0.04 | Orthogroups_2024-Update | |
At5g14320 | No alias | 30S ribosomal protein S13, chloroplastic... | 0.02 | Orthogroups_2024-Update | |
Bradi1g10990 | No alias | Ribosomal protein S13/S18 family | 0.03 | Orthogroups_2024-Update | |
Brara.C00617.1 | No alias | component *(uS13c) of small plastid ribosomal-subunit proteome | 0.04 | Orthogroups_2024-Update | |
Brara.J02025.1 | No alias | component *(uS13c) of small plastid ribosomal-subunit proteome | 0.05 | Orthogroups_2024-Update | |
Cre12.g493950 | No alias | Ribosomal protein S13/S18 family | 0.08 | Orthogroups_2024-Update | |
Glyma.04G253300 | No alias | Ribosomal protein S13/S18 family | 0.03 | Orthogroups_2024-Update | |
Kfl00859_0050 | kfl00859_0050_v1.1 | (at5g14320 : 143.0) Ribosomal protein S13/S18 family;... | 0.04 | Orthogroups_2024-Update | |
LOC_Os03g49710 | No alias | ribosomal protein S13p/S18e, putative, expressed | 0.02 | Orthogroups_2024-Update | |
Mp1g18230.1 | No alias | component mtRPS13|psRPS13 of small ribosomal subunit... | 0.03 | Orthogroups_2024-Update | |
Potri.002G088300 | No alias | Ribosomal protein S13/S18 family | 0.04 | Orthogroups_2024-Update | |
Potri.005G172600 | No alias | Ribosomal protein S13/S18 family | 0.03 | Orthogroups_2024-Update | |
Pp1s258_19V6 | No alias | 30s ribosomal protein s13 | 0.04 | Orthogroups_2024-Update | |
Seita.9G124300.1 | No alias | component *(uS13c) of small plastid ribosomal-subunit proteome | 0.04 | Orthogroups_2024-Update | |
Seita.9G124400.1 | No alias | component *(uS13c) of small plastid ribosomal-subunit proteome | 0.05 | Orthogroups_2024-Update | |
Sobic.001G122400.1 | No alias | component *(uS13c) of small plastid ribosomal-subunit proteome | 0.05 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | InterProScan predictions |
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005622 | intracellular | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000062 | fatty-acyl-CoA binding | IEP | Predicted GO |
MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
MF | GO:0003860 | 3-hydroxyisobutyryl-CoA hydrolase activity | IEP | Predicted GO |
MF | GO:0004853 | uroporphyrinogen decarboxylase activity | IEP | Predicted GO |
MF | GO:0005525 | GTP binding | IEP | Predicted GO |
BP | GO:0006081 | cellular aldehyde metabolic process | IEP | Predicted GO |
BP | GO:0006353 | DNA-templated transcription, termination | IEP | Predicted GO |
BP | GO:0006414 | translational elongation | IEP | Predicted GO |
BP | GO:0006457 | protein folding | IEP | Predicted GO |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0009240 | isopentenyl diphosphate biosynthetic process | IEP | Predicted GO |
CC | GO:0009512 | cytochrome b6f complex | IEP | Predicted GO |
CC | GO:0009523 | photosystem II | IEP | Predicted GO |
CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Predicted GO |
BP | GO:0010564 | regulation of cell cycle process | IEP | Predicted GO |
BP | GO:0016226 | iron-sulfur cluster assembly | IEP | Predicted GO |
MF | GO:0016289 | CoA hydrolase activity | IEP | Predicted GO |
MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | Predicted GO |
MF | GO:0016726 | oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor | IEP | Predicted GO |
MF | GO:0016790 | thiolester hydrolase activity | IEP | Predicted GO |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
BP | GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | IEP | Predicted GO |
BP | GO:0019682 | glyceraldehyde-3-phosphate metabolic process | IEP | Predicted GO |
BP | GO:0030163 | protein catabolic process | IEP | Predicted GO |
BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | Predicted GO |
BP | GO:0032465 | regulation of cytokinesis | IEP | Predicted GO |
MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
BP | GO:0032954 | regulation of cytokinetic process | IEP | Predicted GO |
BP | GO:0032955 | regulation of division septum assembly | IEP | Predicted GO |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Predicted GO |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Predicted GO |
MF | GO:0033218 | amide binding | IEP | Predicted GO |
BP | GO:0044087 | regulation of cellular component biogenesis | IEP | Predicted GO |
CC | GO:0044436 | thylakoid part | IEP | Predicted GO |
BP | GO:0046490 | isopentenyl diphosphate metabolic process | IEP | Predicted GO |
BP | GO:0050992 | dimethylallyl diphosphate biosynthetic process | IEP | Predicted GO |
BP | GO:0050993 | dimethylallyl diphosphate metabolic process | IEP | Predicted GO |
BP | GO:0051128 | regulation of cellular component organization | IEP | Predicted GO |
BP | GO:0051186 | cofactor metabolic process | IEP | Predicted GO |
BP | GO:0051301 | cell division | IEP | Predicted GO |
BP | GO:0051302 | regulation of cell division | IEP | Predicted GO |
MF | GO:0051745 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity | IEP | Predicted GO |
CC | GO:0070069 | cytochrome complex | IEP | Predicted GO |
MF | GO:1901567 | fatty acid derivative binding | IEP | Predicted GO |
MF | GO:1901681 | sulfur compound binding | IEP | Predicted GO |
BP | GO:1901891 | regulation of cell septum assembly | IEP | Predicted GO |
CC | GO:1990204 | oxidoreductase complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001892 | Ribosomal_S13 | 49 | 153 |
No external refs found! |