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  5. MA_10432950g0010

MA_10432950g0010


Description : (at3g07490 : 86.3) A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.; ARF-GAP domain 11 (AGD11); FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Parvalbumin (InterPro:IPR008080), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT2G43290.1); Has 25143 Blast hits to 16842 proteins in 1503 species: Archae - 3; Bacteria - 170; Metazoa - 10890; Fungi - 4135; Plants - 6085; Viruses - 0; Other Eukaryotes - 3860 (source: NCBI BLink). & (reliability: 172.6) & (original description: no original description)


Gene families : OG_42_0003779 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003779_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_10432950g0010
Cluster HCCA clusters: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
A4A49_01283 No alias putative calcium-binding protein cml45 0.03 Orthogroups_2024-Update
A4A49_32283 No alias putative calcium-binding protein cml45 0.02 Orthogroups_2024-Update
At5g39670 No alias Probable calcium-binding protein CML46... 0.04 Orthogroups_2024-Update
GRMZM2G157241 No alias Calcium-binding EF-hand family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G086900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G066260.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Potri.008G087900 No alias Calcium-binding EF-hand family protein 0.03 Orthogroups_2024-Update
Potri.017G084800 No alias Calcium-binding EF-hand family protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
CC GO:0005787 signal peptidase complex IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 60 123
No external refs found!