Description : (at1g78630 : 164.0) embryo defective 1473 (emb1473); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: thylakoid, ribosome, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT3G01790.2); Has 8725 Blast hits to 8725 proteins in 2839 species: Archae - 248; Bacteria - 5258; Metazoa - 358; Fungi - 293; Plants - 251; Viruses - 0; Other Eukaryotes - 2317 (source: NCBI BLink). & (p12629|rk13_spiol : 159.0) 50S ribosomal protein L13, chloroplast precursor (CL13) - Spinacia oleracea (Spinach) & (reliability: 328.0) & (original description: no original description)
Gene families : OG_42_0005662 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005662_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_10433400g0010 | |
Cluster | HCCA clusters: Cluster_3 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
7665 | No alias | Ribosomal protein L13 family protein | 0.03 | Orthogroups_2024-Update | |
A4A49_20292 | No alias | 50s ribosomal protein l13, chloroplastic | 0.03 | Orthogroups_2024-Update | |
At1g78630 | No alias | 50S ribosomal protein L13, chloroplastic... | 0.05 | Orthogroups_2024-Update | |
Bradi2g49850 | No alias | Ribosomal protein L13 family protein | 0.04 | Orthogroups_2024-Update | |
Brara.B02333.1 | No alias | component *(uL13c) of large plastid ribosomal-subunit proteome | 0.05 | Orthogroups_2024-Update | |
Brara.G03600.1 | No alias | component *(uL13c) of large plastid ribosomal-subunit proteome | 0.08 | Orthogroups_2024-Update | |
Cre06.g264350 | No alias | Ribosomal protein L13 family protein | 0.1 | Orthogroups_2024-Update | |
GRMZM2G043212 | No alias | Ribosomal protein L13 family protein | 0.04 | Orthogroups_2024-Update | |
Glyma.15G209000 | No alias | Ribosomal protein L13 family protein | 0.08 | Orthogroups_2024-Update | |
HORVU3Hr1G071530.1 | No alias | component *(uL13c) of large plastid ribosomal-subunit proteome | 0.1 | Orthogroups_2024-Update | |
Kfl00255_0080 | kfl00255_0080_v1.1 | (at1g78630 : 240.0) embryo defective 1473 (emb1473);... | 0.04 | Orthogroups_2024-Update | |
LOC_Os01g54540 | No alias | ribosomal protein L13, putative, expressed | 0.05 | Orthogroups_2024-Update | |
Pp1s152_173V6 | No alias | 50s ribosomal protein l13 | 0.02 | Orthogroups_2024-Update | |
Pp1s365_36V6 | No alias | ribosomal protein l13 | 0.07 | Orthogroups_2024-Update | |
Seita.5G318200.1 | No alias | component *(uL13c) of large plastid ribosomal-subunit proteome | 0.06 | Orthogroups_2024-Update | |
Sobic.003G295800.1 | No alias | component *(uL13c) of large plastid ribosomal-subunit proteome | 0.05 | Orthogroups_2024-Update | |
Solyc12g014390 | No alias | Non-LTR retroelement reverse transcriptase-like protein,... | 0.05 | Orthogroups_2024-Update | |
Sopen12g006160 | No alias | Ribosomal protein L13 | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0004853 | uroporphyrinogen decarboxylase activity | IEP | Predicted GO |
CC | GO:0005622 | intracellular | IEP | Predicted GO |
BP | GO:0006457 | protein folding | IEP | Predicted GO |
BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | Predicted GO |
CC | GO:0009512 | cytochrome b6f complex | IEP | Predicted GO |
CC | GO:0009521 | photosystem | IEP | Predicted GO |
CC | GO:0009523 | photosystem II | IEP | Predicted GO |
CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Predicted GO |
BP | GO:0015979 | photosynthesis | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
BP | GO:0030163 | protein catabolic process | IEP | Predicted GO |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Predicted GO |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Predicted GO |
CC | GO:0034357 | photosynthetic membrane | IEP | Predicted GO |
CC | GO:0042651 | thylakoid membrane | IEP | Predicted GO |
CC | GO:0044436 | thylakoid part | IEP | Predicted GO |
CC | GO:0070069 | cytochrome complex | IEP | Predicted GO |
CC | GO:0098796 | membrane protein complex | IEP | Predicted GO |
CC | GO:1902494 | catalytic complex | IEP | Predicted GO |
CC | GO:1990204 | oxidoreductase complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR005822 | Ribosomal_L13 | 11 | 92 |
No external refs found! |