MA_10433400g0010


Description : (at1g78630 : 164.0) embryo defective 1473 (emb1473); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: thylakoid, ribosome, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT3G01790.2); Has 8725 Blast hits to 8725 proteins in 2839 species: Archae - 248; Bacteria - 5258; Metazoa - 358; Fungi - 293; Plants - 251; Viruses - 0; Other Eukaryotes - 2317 (source: NCBI BLink). & (p12629|rk13_spiol : 159.0) 50S ribosomal protein L13, chloroplast precursor (CL13) - Spinacia oleracea (Spinach) & (reliability: 328.0) & (original description: no original description)


Gene families : OG_42_0005662 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005662_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_10433400g0010
Cluster HCCA clusters: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
7665 No alias Ribosomal protein L13 family protein 0.03 Orthogroups_2024-Update
A4A49_20292 No alias 50s ribosomal protein l13, chloroplastic 0.03 Orthogroups_2024-Update
At1g78630 No alias 50S ribosomal protein L13, chloroplastic... 0.05 Orthogroups_2024-Update
Bradi2g49850 No alias Ribosomal protein L13 family protein 0.04 Orthogroups_2024-Update
Brara.B02333.1 No alias component *(uL13c) of large plastid ribosomal-subunit proteome 0.05 Orthogroups_2024-Update
Brara.G03600.1 No alias component *(uL13c) of large plastid ribosomal-subunit proteome 0.08 Orthogroups_2024-Update
Cre06.g264350 No alias Ribosomal protein L13 family protein 0.1 Orthogroups_2024-Update
GRMZM2G043212 No alias Ribosomal protein L13 family protein 0.04 Orthogroups_2024-Update
Glyma.15G209000 No alias Ribosomal protein L13 family protein 0.08 Orthogroups_2024-Update
HORVU3Hr1G071530.1 No alias component *(uL13c) of large plastid ribosomal-subunit proteome 0.1 Orthogroups_2024-Update
Kfl00255_0080 kfl00255_0080_v1.1 (at1g78630 : 240.0) embryo defective 1473 (emb1473);... 0.04 Orthogroups_2024-Update
LOC_Os01g54540 No alias ribosomal protein L13, putative, expressed 0.05 Orthogroups_2024-Update
Pp1s152_173V6 No alias 50s ribosomal protein l13 0.02 Orthogroups_2024-Update
Pp1s365_36V6 No alias ribosomal protein l13 0.07 Orthogroups_2024-Update
Seita.5G318200.1 No alias component *(uL13c) of large plastid ribosomal-subunit proteome 0.06 Orthogroups_2024-Update
Sobic.003G295800.1 No alias component *(uL13c) of large plastid ribosomal-subunit proteome 0.05 Orthogroups_2024-Update
Solyc12g014390 No alias Non-LTR retroelement reverse transcriptase-like protein,... 0.05 Orthogroups_2024-Update
Sopen12g006160 No alias Ribosomal protein L13 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
CC GO:0009512 cytochrome b6f complex IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
CC GO:0034357 photosynthetic membrane IEP Predicted GO
CC GO:0042651 thylakoid membrane IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0070069 cytochrome complex IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 11 92
No external refs found!