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  5. MA_10433418g0010

MA_10433418g0010


Description : (at1g12860 : 83.2) Encodes ICE2 (Inducer of CBF Expression 2), a transcription factor of the bHLH family that participates in the response to deep freezing through the cold acclimation-dependent pathway. Overexpression of ICE2 results in increased tolerance to deep freezing stress after cold acclimation.; SCREAM 2 (SCRM2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to freezing, guard mother cell differentiation, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G26744.4); Has 4150 Blast hits to 4134 proteins in 202 species: Archae - 0; Bacteria - 1; Metazoa - 48; Fungi - 52; Plants - 4003; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). & (reliability: 166.4) & (original description: no original description)


Gene families : OG_42_0000609 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000609_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_10433418g0010
Cluster HCCA clusters: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
At5g57150 No alias Basic helix-loop-helix (BHLH) DNA-binding superfamily... 0.03 Orthogroups_2024-Update
Brara.C01203.1 No alias bHLH-type transcription factor 0.02 Orthogroups_2024-Update
Brara.D01683.1 No alias transcriptional regulator *(FIT) of iron homeostasis &... 0.03 Orthogroups_2024-Update
Brara.G01353.1 No alias transcriptional regulator *(FIT) of iron homeostasis &... 0.04 Orthogroups_2024-Update
GRMZM2G042895 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G101100 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G066090.2 No alias Unknown function 0.04 Orthogroups_2024-Update
MA_16489g0010 No alias (at5g57150 : 91.7) basic helix-loop-helix (bHLH)... 0.04 Orthogroups_2024-Update
MA_196775g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00019813-RA No alias (at5g57150 : 86.7) basic helix-loop-helix (bHLH)... 0.05 Orthogroups_2024-Update
Sobic.007G051800.1 No alias bHLH-type transcription factor 0.03 Orthogroups_2024-Update
Solyc07g018010 No alias bHLH transcription factor139 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 22 64
No external refs found!