Description : (at5g19350 : 259.0) RNA-binding (RRM/RBD/RNP motifs) family protein; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1); Has 29846 Blast hits to 17541 proteins in 840 species: Archae - 12; Bacteria - 2412; Metazoa - 15092; Fungi - 3490; Plants - 6065; Viruses - 0; Other Eukaryotes - 2775 (source: NCBI BLink). & (p28644|roc1_spiol : 80.9) 28 kDa ribonucleoprotein, chloroplast (28RNP) - Spinacia oleracea (Spinach) & (reliability: 512.0) & (original description: no original description)
Gene families : OG_42_0000344 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000344_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_10433660g0010 | |
Cluster | HCCA clusters: Cluster_46 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi1g73030 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.03 | Orthogroups_2024-Update | |
Brara.J01649.1 | No alias | regulatory factor *(RBP45/47) of mRNA stress granule formation | 0.04 | Orthogroups_2024-Update | |
GRMZM2G168163 | No alias | RNA-binding protein 47C | 0.03 | Orthogroups_2024-Update | |
HORVU2Hr1G046380.3 | No alias | regulatory factor *(RBP45/47) of mRNA stress granule formation | 0.04 | Orthogroups_2024-Update | |
PSME_00014443-RA | No alias | (at5g19350 : 396.0) RNA-binding (RRM/RBD/RNP motifs)... | 0.04 | Orthogroups_2024-Update | |
Sopen11g025610 | No alias | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003682 | chromatin binding | IEP | Predicted GO |
CC | GO:0005643 | nuclear pore | IEP | Predicted GO |
MF | GO:0008134 | transcription factor binding | IEP | Predicted GO |
MF | GO:0017025 | TBP-class protein binding | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
No external refs found! |