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  5. MA_10433660g0010

MA_10433660g0010


Description : (at5g19350 : 259.0) RNA-binding (RRM/RBD/RNP motifs) family protein; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1); Has 29846 Blast hits to 17541 proteins in 840 species: Archae - 12; Bacteria - 2412; Metazoa - 15092; Fungi - 3490; Plants - 6065; Viruses - 0; Other Eukaryotes - 2775 (source: NCBI BLink). & (p28644|roc1_spiol : 80.9) 28 kDa ribonucleoprotein, chloroplast (28RNP) - Spinacia oleracea (Spinach) & (reliability: 512.0) & (original description: no original description)


Gene families : OG_42_0000344 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000344_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Picea release: MA_10433660g0010
Cluster HCCA clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Bradi1g73030 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Brara.J01649.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.04 Orthogroups_2024-Update
GRMZM2G168163 No alias RNA-binding protein 47C 0.03 Orthogroups_2024-Update
HORVU2Hr1G046380.3 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.04 Orthogroups_2024-Update
PSME_00014443-RA No alias (at5g19350 : 396.0) RNA-binding (RRM/RBD/RNP motifs)... 0.04 Orthogroups_2024-Update
Sopen11g025610 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 145 214
IPR000504 RRM_dom 51 118
No external refs found!