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MA_10434126g0020


Description : (at1g80680 : 731.0) Mutant has early-flowering phenotype, encodes a putative nucleoporin. Required for the activation of downstream defense pathways by the snc1 mutation. Involved in basal resistance against bacterial pathogens.; SUPPRESSOR OF AUXIN RESISTANCE 3 (SAR3); FUNCTIONS IN: porin activity; INVOLVED IN: mRNA export from nucleus, defense response signaling pathway, resistance gene-dependent, response to auxin stimulus, negative regulation of flower development, developmental process; LOCATED IN: nuclear membrane, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230), Nuclear protein 96 (InterPro:IPR021967); BEST Arabidopsis thaliana protein match is: Nucleoporin autopeptidase (TAIR:AT1G10390.2); Has 653 Blast hits to 526 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 224; Plants - 93; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink). & (reliability: 1462.0) & (original description: no original description)


Gene families : OG_42_0001108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001108_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Picea release: MA_10434126g0020
Cluster HCCA clusters: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
Brara.G02046.1 No alias scaffold nucleoporin of nuclear pore complex 0.02 Orthogroups_2024-Update
HORVU4Hr1G024430.8 No alias nucleoporin of nuclear pore complex *(NUP98) 0.05 Orthogroups_2024-Update
evm.model.tig00000663.22 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA InterProScan predictions
BP GO:0006913 nucleocytoplasmic transport IEA InterProScan predictions
MF GO:0017056 structural constituent of nuclear pore IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR021967 Nup96 530 810
IPR007230 Peptidase_S59 3 103
No external refs found!