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  5. MA_10436516g0020

MA_10436516g0020


Description : (at3g45980 : 175.0) Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases as well as the UBC1 and UBC2 E2 ubiquitin conjugating enzymes. Lysine 146 appears to be the site of the ubiquitin addition.; HTB9; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT1G07790.1); Has 3616 Blast hits to 3469 proteins in 351 species: Archae - 0; Bacteria - 64; Metazoa - 2275; Fungi - 213; Plants - 487; Viruses - 0; Other Eukaryotes - 577 (source: NCBI BLink). & (q1s9i9|h2b1_medtr : 172.0) Probable histone H2B.1 - Medicago truncatula (Barrel medic) & (reliability: 350.0) & (original description: no original description)


Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Picea release: MA_10436516g0020
Cluster HCCA clusters: Cluster_198

Target Alias Description ECC score Gene Family Method Actions
Bradi2g00510 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G141700 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.12G065100 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G065200 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.20G191600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G009040.2 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
LOC_Os01g05630 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.02 Orthogroups_2024-Update
LOC_Os01g05900 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.02 Orthogroups_2024-Update
MA_1040421g0010 No alias (at3g45980 : 114.0) Encodes a histone 2B (H2B) protein.... 0.03 Orthogroups_2024-Update
Seita.5G107600.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
evm.model.contig_498.4 No alias (p16868|h2b4_volca : 127.0) Histone H2B.4 (H2B-IV) -... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 6 117
No external refs found!