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  5. MA_105179g0010

MA_105179g0010


Description : (at3g61520 : 400.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink). & (q76c99|rf1_orysa : 305.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 800.0) & (original description: no original description)


Gene families : OG_42_0002497 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002497_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_105179g0010
Cluster HCCA clusters: Cluster_270

Target Alias Description ECC score Gene Family Method Actions
MA_20659g0010 No alias (at2g40240 : 129.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00013689-RA No alias no hits & (original description: no original description) 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Predicted GO
CC GO:0000445 THO complex part of transcription export complex IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
CC GO:0030008 TRAPP complex IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 468 517
IPR002885 Pentatricopeptide_repeat 608 649
IPR002885 Pentatricopeptide_repeat 538 587
IPR002885 Pentatricopeptide_repeat 119 166
IPR002885 Pentatricopeptide_repeat 293 342
IPR002885 Pentatricopeptide_repeat 398 447
IPR002885 Pentatricopeptide_repeat 188 236
IPR002885 Pentatricopeptide_repeat 366 396
IPR002885 Pentatricopeptide_repeat 90 112
IPR002885 Pentatricopeptide_repeat 254 287
No external refs found!