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Description : (at4g02750 : 473.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (q76c99|rf1_orysa : 137.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 946.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_10721g0010 | |
| Cluster | HCCA clusters: Cluster_68 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 134463 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU1Hr1G087370.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| PSME_00054674-RA | No alias | (at4g33170 : 289.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| Potri.010G086200 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Sobic.001G282300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003856 | 3-dehydroquinate synthase activity | IEP | Predicted GO |
| BP | GO:0008652 | cellular amino acid biosynthetic process | IEP | Predicted GO |
| BP | GO:0009072 | aromatic amino acid family metabolic process | IEP | Predicted GO |
| BP | GO:0009073 | aromatic amino acid family biosynthetic process | IEP | Predicted GO |
| MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Predicted GO |
| MF | GO:0050662 | coenzyme binding | IEP | Predicted GO |
| MF | GO:0071949 | FAD binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 287 | 315 |
| IPR002885 | Pentatricopeptide_repeat | 418 | 466 |
| IPR002885 | Pentatricopeptide_repeat | 318 | 365 |
| IPR002885 | Pentatricopeptide_repeat | 124 | 171 |
| IPR002885 | Pentatricopeptide_repeat | 227 | 257 |
| IPR002885 | Pentatricopeptide_repeat | 258 | 286 |
| IPR002885 | Pentatricopeptide_repeat | 560 | 588 |
| IPR002885 | Pentatricopeptide_repeat | 493 | 518 |
| IPR002885 | Pentatricopeptide_repeat | 199 | 225 |
| No external refs found! |