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MA_11025g0010


Description : (at4g33440 : 320.0) Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G62110.1); Has 4317 Blast hits to 4300 proteins in 507 species: Archae - 6; Bacteria - 1547; Metazoa - 14; Fungi - 1180; Plants - 1416; Viruses - 2; Other Eukaryotes - 152 (source: NCBI BLink). & (reliability: 640.0) & (original description: no original description)


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_11025g0010
Cluster HCCA clusters: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Bradi3g13260 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G179000 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.19G213400 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os07g14160 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g26800 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
Potri.017G145901 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 186 283
No external refs found!