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  5. MA_112849g0010

MA_112849g0010


Description : (at3g09040 : 606.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 73401 Blast hits to 14698 proteins in 289 species: Archae - 0; Bacteria - 19; Metazoa - 251; Fungi - 280; Plants - 71776; Viruses - 0; Other Eukaryotes - 1075 (source: NCBI BLink). & (q76c99|rf1_orysa : 140.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1212.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_112849g0010
Cluster HCCA clusters: Cluster_242

Target Alias Description ECC score Gene Family Method Actions
96927 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G228000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G159200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G086500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G019130.5 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_175623g0010 No alias (at2g03880 : 559.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
PSME_00011207-RA No alias (at3g63370 : 641.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00016832-RA No alias (at4g18750 : 587.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00021863-RA No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00048055-RA No alias (at4g13650 : 598.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00054339-RA No alias (at4g14850 : 536.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00056594-RA No alias (at3g53360 : 383.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Seita.5G065900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G357300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G151300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G341000.1 No alias RNA editing factor *(MEF25) 0.03 Orthogroups_2024-Update
Sobic.003G030100.1 No alias RNA editing factor *(CWM1) 0.03 Orthogroups_2024-Update
Sopen04g026710 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 717 763
IPR002885 Pentatricopeptide_repeat 614 662
IPR002885 Pentatricopeptide_repeat 114 162
IPR002885 Pentatricopeptide_repeat 216 260
IPR002885 Pentatricopeptide_repeat 312 358
IPR002885 Pentatricopeptide_repeat 513 557
IPR002885 Pentatricopeptide_repeat 417 438
IPR002885 Pentatricopeptide_repeat 793 814
IPR032867 DYW_dom 889 946
No external refs found!