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Description : (at1g01060 : 122.0) LHY encodes a myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1; LATE ELONGATED HYPOCOTYL (LHY); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: circadian clock associated 1 (TAIR:AT2G46830.1). & (reliability: 244.0) & (original description: no original description)
Gene families : OG_42_0000380 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000380_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_115536g0010 | |
| Cluster | HCCA clusters: Cluster_63 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At1g01520 | No alias | ASG4 [Source:UniProtKB/TrEMBL;Acc:A0A178W835] | 0.02 | Orthogroups_2024-Update | |
| At4g01280 | No alias | Protein REVEILLE 5 [Source:UniProtKB/Swiss-Prot;Acc:C0SVG5] | 0.03 | Orthogroups_2024-Update | |
| At5g17300 | No alias | Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6] | 0.04 | Orthogroups_2024-Update | |
| Bradi3g51757 | No alias | Homeodomain-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
| Brara.C00761.1 | No alias | transcription factor *(REVEILLE) | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G115070 | No alias | Homeodomain-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G118693 | No alias | Homeodomain-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.02G241000 | No alias | Homeodomain-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.09G131400 | No alias | Homeodomain-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.10G048500 | No alias | Homeodomain-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.18G237700 | No alias | Homeodomain-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.19G178000 | No alias | Homeodomain-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU0Hr1G031850.2 | No alias | circadian clock factor *(REVEILLE) & transcription... | 0.03 | Orthogroups_2024-Update | |
| HORVU6Hr1G066000.2 | No alias | circadian clock factor *(REVEILLE) & transcription... | 0.03 | Orthogroups_2024-Update | |
| Kfl00255_0190 | kfl00255_0190_v1.... | (at1g01060 : 122.0) LHY encodes a myb-related putative... | 0.01 | Orthogroups_2024-Update | |
| Potri.002G163100 | No alias | Homeodomain-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.004G074300 | No alias | Homeodomain-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.014G089300 | No alias | Homeodomain-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.015G030400 | No alias | Homeodomain-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.017G144800 | No alias | Homeodomain-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Pp1s198_135V6 | No alias | dna binding protein | 0.02 | Orthogroups_2024-Update | |
| Seita.4G266800.1 | No alias | circadian clock factor *(REVEILLE) & transcription... | 0.02 | Orthogroups_2024-Update | |
| Sobic.004G281800.1 | No alias | circadian clock factor *(REVEILLE) & transcription... | 0.04 | Orthogroups_2024-Update | |
| Sobic.010G004300.1 | No alias | circadian clock factor *(REVEILLE) & transcription... | 0.03 | Orthogroups_2024-Update | |
| Solyc01g095030 | No alias | Myb family transcription factor family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
| Sopen10g033810 | No alias | Myb-like DNA-binding domain | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0005515 | protein binding | IEP | Predicted GO |
| BP | GO:0009119 | ribonucleoside metabolic process | IEP | Predicted GO |
| BP | GO:0015969 | guanosine tetraphosphate metabolic process | IEP | Predicted GO |
| CC | GO:0016459 | myosin complex | IEP | Predicted GO |
| CC | GO:0031011 | Ino80 complex | IEP | Predicted GO |
| CC | GO:0033202 | DNA helicase complex | IEP | Predicted GO |
| BP | GO:0034035 | purine ribonucleoside bisphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0042278 | purine nucleoside metabolic process | IEP | Predicted GO |
| CC | GO:0044430 | cytoskeletal part | IEP | Predicted GO |
| CC | GO:0044454 | nuclear chromosome part | IEP | Predicted GO |
| BP | GO:0046128 | purine ribonucleoside metabolic process | IEP | Predicted GO |
| CC | GO:0070603 | SWI/SNF superfamily-type complex | IEP | Predicted GO |
| CC | GO:0097346 | INO80-type complex | IEP | Predicted GO |
| BP | GO:1901068 | guanosine-containing compound metabolic process | IEP | Predicted GO |
| CC | GO:1904949 | ATPase complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001005 | SANT/Myb | 44 | 87 |
| No external refs found! |