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  5. MA_117766g0010

MA_117766g0010


Description : (at1g12775 : 329.0) Pentatricopeptide repeat (PPR) superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q76c99|rf1_orysa : 273.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 644.0) & (original description: no original description)


Gene families : OG_42_0001385 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001385_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_117766g0010
Cluster HCCA clusters: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
MA_10436301g0020 No alias (at1g62670 : 201.0) Encodes a pentatricopeptide repeat... 0.05 Orthogroups_2024-Update
PSME_00010526-RA No alias (at5g39710 : 229.0) EMBRYO DEFECTIVE 2745 (EMB2745);... 0.03 Orthogroups_2024-Update
PSME_00010606-RA No alias (at3g22470 : 287.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00048186-RA No alias (at3g22470 : 359.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00049152-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0032259 methylation IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 305 338
IPR002885 Pentatricopeptide_repeat 98 128
IPR002885 Pentatricopeptide_repeat 200 232
IPR002885 Pentatricopeptide_repeat 421 464
IPR002885 Pentatricopeptide_repeat 134 183
IPR002885 Pentatricopeptide_repeat 239 288
IPR002885 Pentatricopeptide_repeat 346 394
IPR002885 Pentatricopeptide_repeat 68 94
No external refs found!