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  5. MA_12000g0010

MA_12000g0010


Description : (at5g22440 : 343.0) Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT1G08360.1); Has 4875 Blast hits to 4874 proteins in 1649 species: Archae - 280; Bacteria - 2611; Metazoa - 459; Fungi - 187; Plants - 522; Viruses - 0; Other Eukaryotes - 816 (source: NCBI BLink). & (q9sw75|rl10a_chlre : 258.0) 60S ribosomal protein L10a - Chlamydomonas reinhardtii & (reliability: 686.0) & (original description: no original description)


Gene families : OG_42_0001635 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001635_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_12000g0010
Cluster HCCA clusters: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
230302 No alias Ribosomal protein L1p/L10e family 0.09 Orthogroups_2024-Update
A4A49_21782 No alias 60s ribosomal protein l10a-1 0.08 Orthogroups_2024-Update
At5g22440 No alias 60S ribosomal protein L10a-3... 0.03 Orthogroups_2024-Update
Bradi2g55600 No alias Ribosomal protein L1p/L10e family 0.04 Orthogroups_2024-Update
Bradi3g42800 No alias Ribosomal protein L1p/L10e family 0.07 Orthogroups_2024-Update
Brara.C01003.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Brara.D01641.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Brara.J01470.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Cre02.g101350 No alias Ribosomal protein L1p/L10e family 0.09 Orthogroups_2024-Update
Glyma.12G184900 No alias Ribosomal protein L1p/L10e family 0.05 Orthogroups_2024-Update
Glyma.13G316400 No alias Ribosomal protein L1p/L10e family 0.08 Orthogroups_2024-Update
Glyma.18G026100 No alias Ribosomal protein L1p/L10e family 0.05 Orthogroups_2024-Update
HORVU3Hr1G084310.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
HORVU4Hr1G001350.5 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
HORVU7Hr1G059090.5 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Kfl00440_0070 kfl00440_0070_v1.... (at2g27530 : 310.0) Encodes ribosomal protein L10aP.... 0.04 Orthogroups_2024-Update
LOC_Os02g21660 No alias L1P family of ribosomal proteins domain containing... 0.02 Orthogroups_2024-Update
Mp3g07650.1 No alias component RPL10a of LSU proteome component 0.03 Orthogroups_2024-Update
PSME_00037360-RA No alias (at1g08360 : 341.0) Ribosomal protein L1p/L10e family;... 0.06 Orthogroups_2024-Update
Potri.004G202766 No alias Ribosomal protein L1p/L10e family 0.03 Orthogroups_2024-Update
Potri.004G202832 No alias Ribosomal protein L1p/L10e family 0.04 Orthogroups_2024-Update
Potri.007G034800 No alias Ribosomal protein L1p/L10e family 0.04 Orthogroups_2024-Update
Potri.007G035600 No alias Ribosomal protein L1p/L10e family 0.05 Orthogroups_2024-Update
Pp1s18_121V6 No alias 60s ribosomal protein l10a-1 0.03 Orthogroups_2024-Update
Pp1s40_297V6 No alias 60s ribosomal protein l10a-1 0.05 Orthogroups_2024-Update
Seita.5G389700.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Seita.6G243700.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Sobic.003G363800.2 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Sobic.007G169533.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.007G169600.1 No alias component *(uL1) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Solyc01g009520 No alias Ribosomal protein (AHRD V3.3 *** K4ATE8_SOLLC) 0.09 Orthogroups_2024-Update
Solyc06g074300 No alias 5'-3' exonuclease family protein (AHRD V3.3 --* AT3G28030.4) 0.08 Orthogroups_2024-Update
Solyc11g068420 No alias Ribosomal protein (AHRD V3.3 *** M1CHW0_SOLTU) 0.07 Orthogroups_2024-Update
Sopen01g005070 No alias Ribosomal protein L1p/L10e family 0.1 Orthogroups_2024-Update
Sopen06g030750 No alias Ribosomal protein L1p/L10e family 0.07 Orthogroups_2024-Update
Sopen11g027130 No alias Ribosomal protein L1p/L10e family 0.09 Orthogroups_2024-Update
evm.model.contig_2315.2 No alias (at2g27530 : 237.0) Encodes ribosomal protein L10aP.... 0.11 Orthogroups_2024-Update
evm.model.tig00020697.31 No alias (at5g22440 : 146.0) Ribosomal protein L1p/L10e family;... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004359 glutaminase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0007030 Golgi organization IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
CC GO:0016272 prefoldin complex IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0019905 syntaxin binding IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042816 vitamin B6 metabolic process IEP Predicted GO
BP GO:0042819 vitamin B6 biosynthetic process IEP Predicted GO
BP GO:0042822 pyridoxal phosphate metabolic process IEP Predicted GO
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046184 aldehyde biosynthetic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 21 210
No external refs found!