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  5. MA_122546g0010

MA_122546g0010


Description : (at3g13770 : 499.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 37890 Blast hits to 13461 proteins in 236 species: Archae - 0; Bacteria - 8; Metazoa - 36; Fungi - 51; Plants - 37361; Viruses - 0; Other Eukaryotes - 434 (source: NCBI BLink). & (q76c99|rf1_orysa : 97.4) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 922.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_122546g0010
Cluster HCCA clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
115259 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
51483 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
At2g36730 No alias Pentatricopeptide repeat-containing protein At2g36730... 0.03 Orthogroups_2024-Update
Bradi2g45250 No alias mitochondrial RNAediting factor 1 0.03 Orthogroups_2024-Update
Bradi3g40131 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g41651 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g57730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.F02971.1 No alias RNA editing factor *(LPA66) 0.06 Orthogroups_2024-Update
GRMZM2G076257 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G173200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.09G286100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G023070.1 No alias RNA editing factor *(OTP81) 0.04 Orthogroups_2024-Update
HORVU3Hr1G023090.1 No alias RNA editing factor *(OTP81) 0.04 Orthogroups_2024-Update
HORVU3Hr1G052470.6 No alias Unknown function 0.05 Orthogroups_2024-Update
PSME_00002375-RA No alias (at3g03580 : 696.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00006159-RA No alias (at3g46790 : 260.0) Encodes a member of a PCMP (plant... 0.03 Orthogroups_2024-Update
PSME_00021863-RA No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00022325-RA No alias (at3g09040 : 700.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00034005-RA No alias (at3g23330 : 585.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00057248-RA No alias (at1g11290 : 733.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
Pp1s26_188V6 No alias No description available 0.02 Orthogroups_2024-Update
Pp1s446_7V6 No alias F18A5.40; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Seita.9G057100.1 No alias RNA editing factor *(OTP85) 0.02 Orthogroups_2024-Update
Solyc07g008480 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen01g041720 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen03g035770 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 245 294
IPR002885 Pentatricopeptide_repeat 334 381
IPR002885 Pentatricopeptide_repeat 143 189
IPR032867 DYW_dom 478 602
IPR002885 Pentatricopeptide_repeat 446 473
IPR002885 Pentatricopeptide_repeat 307 332
No external refs found!