Description : (at2g44680 : 383.0) Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock.; casein kinase II beta subunit 4 (CKB4); CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: casein kinase II beta chain 3 (TAIR:AT3G60250.2); Has 1093 Blast hits to 1091 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 429; Fungi - 285; Plants - 156; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink). & (reliability: 728.0) & (original description: no original description)
Gene families : OG_42_0001423 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001423_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_130537g0010 | |
Cluster | HCCA clusters: Cluster_242 |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005956 | protein kinase CK2 complex | IEA | InterProScan predictions |
MF | GO:0019887 | protein kinase regulator activity | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predicted GO |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predicted GO |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Predicted GO |
MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
MF | GO:0003682 | chromatin binding | IEP | Predicted GO |
MF | GO:0003743 | translation initiation factor activity | IEP | Predicted GO |
MF | GO:0005525 | GTP binding | IEP | Predicted GO |
CC | GO:0005759 | mitochondrial matrix | IEP | Predicted GO |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Predicted GO |
BP | GO:0006397 | mRNA processing | IEP | Predicted GO |
BP | GO:0008380 | RNA splicing | IEP | Predicted GO |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Predicted GO |
CC | GO:0031974 | membrane-enclosed lumen | IEP | Predicted GO |
MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
CC | GO:0043233 | organelle lumen | IEP | Predicted GO |
MF | GO:0043565 | sequence-specific DNA binding | IEP | Predicted GO |
CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
CC | GO:0046540 | U4/U6 x U5 tri-snRNP complex | IEP | Predicted GO |
CC | GO:0070013 | intracellular organelle lumen | IEP | Predicted GO |
CC | GO:0097525 | spliceosomal snRNP complex | IEP | Predicted GO |
CC | GO:0097526 | spliceosomal tri-snRNP complex | IEP | Predicted GO |
CC | GO:0120114 | Sm-like protein family complex | IEP | Predicted GO |
MF | GO:2001070 | starch binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000704 | Casein_kinase_II_reg-sub | 108 | 291 |
No external refs found! |