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MA_140861g0010


Description : (at1g55040 : 210.0) zinc finger (Ran-binding) family protein; FUNCTIONS IN: binding, zinc ion binding; LOCATED IN: nucleus; EXPRESSED IN: cultured cell, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.1); Has 22562 Blast hits to 12307 proteins in 1055 species: Archae - 52; Bacteria - 6108; Metazoa - 7873; Fungi - 2055; Plants - 2458; Viruses - 215; Other Eukaryotes - 3801 (source: NCBI BLink). & (reliability: 420.0) & (original description: no original description)


Gene families : OG_42_0001998 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001998_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_140861g0010
Cluster HCCA clusters: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
Glyma.07G102100 No alias zinc finger (Ran-binding) family protein 0.02 Orthogroups_2024-Update
MA_10426200g0010 No alias (at1g55040 : 288.0) zinc finger (Ran-binding) family... 0.04 Orthogroups_2024-Update
Seita.9G118800.1 No alias RNA editing factor *(OZ) 0.03 Orthogroups_2024-Update
Sobic.001G116800.1 No alias RNA editing factor *(OZ) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 84 111
IPR001876 Znf_RanBP2 118 144
No external refs found!