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  5. MA_17738g0010

MA_17738g0010


Description : (at3g50070 : 241.0) Encode CYCD3;3, a CYCD3 D-type cyclin. Important for determining cell number in developing lateral organs. Mediating cytokinin effects in apical growth and development.; CYCLIN D3;3 (CYCD3;3); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle, regulation of cell proliferation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D3;2 (TAIR:AT5G67260.1); Has 3177 Blast hits to 3175 proteins in 306 species: Archae - 0; Bacteria - 0; Metazoa - 1493; Fungi - 379; Plants - 953; Viruses - 3; Other Eukaryotes - 349 (source: NCBI BLink). & (reliability: 482.0) & (original description: no original description)


Gene families : OG_42_0000136 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000136_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_17738g0010
Cluster HCCA clusters: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
412774 No alias CYCLIN D1;1 0.03 Orthogroups_2024-Update
A4A49_22020 No alias cyclin-d3-1 0.03 Orthogroups_2024-Update
At3g50070 No alias CYCD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VE15] 0.03 Orthogroups_2024-Update
Brara.D01336.1 No alias regulatory protein *(CYCD) of cell cycle 0.02 Orthogroups_2024-Update
Brara.G01181.1 No alias regulatory protein *(CYCD) of cell cycle 0.02 Orthogroups_2024-Update
Brara.I00217.1 No alias regulatory protein *(CYCD) of cell cycle 0.03 Orthogroups_2024-Update
Brara.K00959.1 No alias regulatory protein *(CYCD) of cell cycle 0.06 Orthogroups_2024-Update
Cre10.g466200 No alias Cyclin A1;1 0.01 Orthogroups_2024-Update
GRMZM2G007130 No alias cyclin d5;1 0.02 Orthogroups_2024-Update
Glyma.02G212400 No alias Cyclin D2;1 0.02 Orthogroups_2024-Update
Glyma.10G263500 No alias CYCLIN D3;1 0.03 Orthogroups_2024-Update
Glyma.13G303000 No alias Cyclin D6;1 0.04 Orthogroups_2024-Update
Glyma.14G086200 No alias CYCLIN D3;1 0.02 Orthogroups_2024-Update
Kfl00038_0280 kfl00038_0280_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Kfl00080_0200 kfl00080_0200_v1.1 (at1g70210 : 131.0) Encodes a D-type cyclin that... 0.02 Orthogroups_2024-Update
LOC_Os12g39830 No alias cyclin, putative, expressed 0.03 Orthogroups_2024-Update
Mp1g24670.1 No alias no hits & (original description: none) 0.06 Orthogroups_2024-Update
PSME_00001479-RA No alias (at4g34160 : 239.0) encodes a cyclin D-type protein... 0.06 Orthogroups_2024-Update
PSME_00024235-RA No alias (at4g34160 : 108.0) encodes a cyclin D-type protein... 0.01 Orthogroups_2024-Update
PSME_00047613-RA No alias (at4g34160 : 154.0) encodes a cyclin D-type protein... 0.03 Orthogroups_2024-Update
Potri.014G016700 No alias cyclin d5;1 0.02 Orthogroups_2024-Update
Seita.4G104200.1 No alias regulatory protein *(CYCD) of cell cycle 0.02 Orthogroups_2024-Update
Sobic.005G231400.2 No alias regulatory protein *(CYCD) of cell cycle 0.03 Orthogroups_2024-Update
Solyc02g092980 No alias cyclin D3.1 0.02 Orthogroups_2024-Update
Solyc04g078470 No alias D-type cyclin-3 0.03 Orthogroups_2024-Update
evm.model.contig_2077.9 No alias (at1g80370 : 173.0) Cyclin A2;4 (CYCA2;4); CONTAINS... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006275 regulation of DNA replication IEP Predicted GO
BP GO:0006308 DNA catabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 191 281
IPR006671 Cyclin_N 80 189
No external refs found!