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  5. MA_177779g0010

MA_177779g0010


Description : (at2g35920 : 291.0) RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G04895.1); Has 15667 Blast hits to 10761 proteins in 1709 species: Archae - 0; Bacteria - 5024; Metazoa - 4470; Fungi - 1848; Plants - 1329; Viruses - 777; Other Eukaryotes - 2219 (source: NCBI BLink). & (reliability: 582.0) & (original description: no original description)


Gene families : OG_42_0000651 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000651_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_177779g0010
Cluster HCCA clusters: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
A4A49_10022 No alias dexh-box atp-dependent rna helicase dexh3 0.03 Orthogroups_2024-Update
A4A49_26818 No alias dexh-box atp-dependent rna helicase dexh7, chloroplastic 0.03 Orthogroups_2024-Update
At1g48650 No alias DEA(D/H)-box RNA helicase family protein... 0.03 Orthogroups_2024-Update
Cre06.g266416 No alias RNA helicase family protein 0.04 Orthogroups_2024-Update
Glyma.02G195500 No alias RNA helicase family protein 0.04 Orthogroups_2024-Update
Glyma.09G115600 No alias DEA(D/H)-box RNA helicase family protein 0.04 Orthogroups_2024-Update
Kfl00017_0530 kfl00017_0530_v1.... (at2g35920 : 694.0) RNA helicase family protein;... 0.02 Orthogroups_2024-Update
Kfl00612_0020 kfl00612_0020_v1.1 (at2g35920 : 974.0) RNA helicase family protein;... 0.02 Orthogroups_2024-Update
Potri.008G014100 No alias DEA(D/H)-box RNA helicase family protein 0.06 Orthogroups_2024-Update
Pp1s36_206V6 No alias atp-dependent rna 0.02 Orthogroups_2024-Update
Seita.9G225800.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 98 183
IPR011709 DUF1605 262 360
No external refs found!