Description : (at3g57430 : 648.0) Encodes a chloroplast RNA editing factor.; ORGANELLE TRANSCRIPT PROCESSING 84 (OTP84); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 46517 Blast hits to 13331 proteins in 240 species: Archae - 0; Bacteria - 7; Metazoa - 55; Fungi - 91; Plants - 45789; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink). & (q76c99|rf1_orysa : 128.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1296.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_17949g0010 | |
Cluster | HCCA clusters: Cluster_114 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
74842 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
At5g13270 | No alias | Pentatricopeptide repeat-containing protein At5g13270,... | 0.04 | Orthogroups_2024-Update | |
GRMZM2G399433 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.12G005600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.16G035600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
LOC_Os09g24680 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_168311g0010 | No alias | (at4g02750 : 377.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
MA_174226g0010 | No alias | (at4g13650 : 687.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
MA_181716g0010 | No alias | (at3g12770 : 600.0) Encodes a pentatricopeptide repeat... | 0.04 | Orthogroups_2024-Update | |
MA_381817g0020 | No alias | (at2g22070 : 544.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
Potri.018G040100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.T137000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Solyc01g010510 | No alias | Pentatricopeptide repeat (PPR) superfamily protein (AHRD... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Predicted GO |
MF | GO:0004605 | phosphatidate cytidylyltransferase activity | IEP | Predicted GO |
BP | GO:0006629 | lipid metabolic process | IEP | Predicted GO |
BP | GO:0006644 | phospholipid metabolic process | IEP | Predicted GO |
BP | GO:0006650 | glycerophospholipid metabolic process | IEP | Predicted GO |
BP | GO:0006655 | phosphatidylglycerol biosynthetic process | IEP | Predicted GO |
BP | GO:0008654 | phospholipid biosynthetic process | IEP | Predicted GO |
BP | GO:0032048 | cardiolipin metabolic process | IEP | Predicted GO |
BP | GO:0032049 | cardiolipin biosynthetic process | IEP | Predicted GO |
MF | GO:0043565 | sequence-specific DNA binding | IEP | Predicted GO |
BP | GO:0045017 | glycerolipid biosynthetic process | IEP | Predicted GO |
BP | GO:0046471 | phosphatidylglycerol metabolic process | IEP | Predicted GO |
BP | GO:0046474 | glycerophospholipid biosynthetic process | IEP | Predicted GO |
MF | GO:0070567 | cytidylyltransferase activity | IEP | Predicted GO |
MF | GO:0140110 | transcription regulator activity | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 1026 | 1149 |
IPR032867 | DYW_dom | 654 | 767 |
IPR002885 | Pentatricopeptide_repeat | 6 | 25 |
IPR002885 | Pentatricopeptide_repeat | 557 | 580 |
IPR002885 | Pentatricopeptide_repeat | 929 | 952 |
IPR002885 | Pentatricopeptide_repeat | 853 | 901 |
IPR002885 | Pentatricopeptide_repeat | 180 | 227 |
IPR002885 | Pentatricopeptide_repeat | 280 | 328 |
IPR002885 | Pentatricopeptide_repeat | 481 | 529 |
IPR002885 | Pentatricopeptide_repeat | 94 | 142 |
IPR002885 | Pentatricopeptide_repeat | 382 | 423 |
No external refs found! |