MA_186285g0010

Description : (at1g30760 : 375.0) FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: inflorescence meristem, root, flower, pedicel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT2G34790.1); Has 5139 Blast hits to 5066 proteins in 829 species: Archae - 62; Bacteria - 2468; Metazoa - 28; Fungi - 1653; Plants - 688; Viruses - 0; Other Eukaryotes - 240 (source: NCBI BLink). & (reliability: 750.0) & (original description: no original description)

Gene families : OG_42_0000069 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000069_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Picea release: MA_186285g0010
Cluster	HCCA clusters: Cluster_22

Target	Alias	Description	ECC score	Gene Family Method
Bradi3g09380	No alias	FAD-binding Berberine family protein	0.04	Orthogroups_2024-Update
Brara.G00508.1	No alias	EC_1.1 oxidoreductase acting on CH-OH group of donor	0.03	Orthogroups_2024-Update
Glyma.08G059000	No alias	FAD-binding Berberine family protein	0.02	Orthogroups_2024-Update
Glyma.08G080000	No alias	FAD-binding Berberine family protein	0.03	Orthogroups_2024-Update
Glyma.15G133200	No alias	FAD-binding Berberine family protein	0.03	Orthogroups_2024-Update
HORVU4Hr1G017270.1	No alias	EC_1.1 oxidoreductase acting on CH-OH group of donor	0.03	Orthogroups_2024-Update
Potri.001G463600	No alias	FAD-binding Berberine family protein	0.03	Orthogroups_2024-Update
Potri.011G158600	No alias	FAD-binding Berberine family protein	0.03	Orthogroups_2024-Update
Pp1s128_133V6	No alias	fad-binding protein	0.03	Orthogroups_2024-Update
Seita.4G178600.1	No alias	EC_1.1 oxidoreductase acting on CH-OH group of donor	0.03	Orthogroups_2024-Update
Sobic.010G162700.1	No alias	EC_1.1 oxidoreductase acting on CH-OH group of donor	0.03	Orthogroups_2024-Update
Solyc02g079450	No alias	FAD-binding Berberine family protein (AHRD V3.3 *** AT5G44360.2)	0.02	Orthogroups_2024-Update
Sopen02g019250	No alias	Berberine and berberine like	0.03	Orthogroups_2024-Update
evm.model.contig_3423.9	No alias	(at1g26410 : 107.0) FAD-binding Berberine family...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016491	oxidoreductase activity	IEA	InterProScan predictions
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0048037	cofactor binding	None	Extended
MF	GO:0050660	flavin adenine dinucleotide binding	IEA	InterProScan predictions
MF	GO:0050662	coenzyme binding	None	Extended
BP	GO:0055114	oxidation-reduction process	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004568	chitinase activity	IEP	Predicted GO
BP	GO:0006022	aminoglycan metabolic process	IEP	Predicted GO
BP	GO:0006026	aminoglycan catabolic process	IEP	Predicted GO
BP	GO:0006030	chitin metabolic process	IEP	Predicted GO
BP	GO:0006032	chitin catabolic process	IEP	Predicted GO
BP	GO:0006040	amino sugar metabolic process	IEP	Predicted GO
BP	GO:0006333	chromatin assembly or disassembly	IEP	Predicted GO
MF	GO:0008168	methyltransferase activity	IEP	Predicted GO
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predicted GO
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Predicted GO
BP	GO:0042737	drug catabolic process	IEP	Predicted GO
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Predicted GO
BP	GO:0046348	amino sugar catabolic process	IEP	Predicted GO
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Predicted GO
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR006094	Oxid_FAD_bind_N	58	193
IPR012951	BBE	441	498

External Links

No external refs found!

MA_186285g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation