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  5. MA_1964g0010

MA_1964g0010


Description : (o81221|act_goshi : 729.0) Actin - Gossypium hirsutum (Upland cotton) & (at5g09810 : 726.0) Member of Actin gene family.Mutants are defective in germination and root growth.; actin 7 (ACT7); FUNCTIONS IN: protein binding, structural constituent of cytoskeleton; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion, nucleolus, cell wall, cytoskeleton, plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1); Has 15241 Blast hits to 14839 proteins in 3047 species: Archae - 8; Bacteria - 21; Metazoa - 5732; Fungi - 5247; Plants - 1603; Viruses - 2; Other Eukaryotes - 2628 (source: NCBI BLink). & (reliability: 1452.0) & (original description: no original description)


Gene families : OG_42_0000262 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000262_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_1964g0010
Cluster HCCA clusters: Cluster_236

Target Alias Description ECC score Gene Family Method Actions
A4A49_60853 No alias actin 0.03 Orthogroups_2024-Update
Glyma.18G290800 No alias actin-11 0.02 Orthogroups_2024-Update
HORVU1Hr1G047440.5 No alias actin filament protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G039850.3 No alias actin filament protein 0.02 Orthogroups_2024-Update
Seita.3G227300.1 No alias actin filament protein 0.03 Orthogroups_2024-Update
Sobic.001G112600.1 No alias actin filament protein 0.04 Orthogroups_2024-Update
Sobic.009G005900.1 No alias actin filament protein 0.03 Orthogroups_2024-Update
Sobic.009G153000.1 No alias actin filament protein 0.03 Orthogroups_2024-Update
Sopen10g031050 No alias Actin 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0009415 response to water IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
InterPro domains Description Start Stop
IPR004000 Actin 48 420
No external refs found!