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Description : (at4g02750 : 551.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (q76c99|rf1_orysa : 119.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1102.0) & (original description: no original description)
Gene families : OG_42_0007429 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007429_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_20585g0020 | |
| Cluster | HCCA clusters: Cluster_46 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Glyma.09G017100 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
| PSME_00008438-RA | No alias | (at4g02750 : 556.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| Potri.016G082200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Solyc07g005170 | No alias | Pentatricopeptide repeat-containing protein, putative... | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 299 | 347 |
| IPR002885 | Pentatricopeptide_repeat | 198 | 246 |
| IPR002885 | Pentatricopeptide_repeat | 401 | 448 |
| IPR002885 | Pentatricopeptide_repeat | 106 | 138 |
| IPR002885 | Pentatricopeptide_repeat | 362 | 400 |
| IPR002885 | Pentatricopeptide_repeat | 139 | 169 |
| IPR002885 | Pentatricopeptide_repeat | 478 | 499 |
| IPR002885 | Pentatricopeptide_repeat | 78 | 105 |
| IPR002885 | Pentatricopeptide_repeat | 16 | 45 |
| IPR002885 | Pentatricopeptide_repeat | 46 | 75 |
| No external refs found! |