Description : (at4g37170 : 594.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 43848 Blast hits to 14238 proteins in 253 species: Archae - 0; Bacteria - 12; Metazoa - 20; Fungi - 118; Plants - 43065; Viruses - 0; Other Eukaryotes - 633 (source: NCBI BLink). & (q76c99|rf1_orysa : 114.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1188.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_210823g0010 | |
Cluster | HCCA clusters: Cluster_47 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At3g03580 | No alias | Pentatricopeptide repeat-containing protein At3g03580... | 0.02 | Orthogroups_2024-Update | |
Bradi2g25480 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.08G213800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.07 | Orthogroups_2024-Update | |
LOC_Os01g72930 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
PSME_00001413-RA | No alias | (at4g18750 : 525.0) Encodes a pentatricopeptide (PPR)... | 0.04 | Orthogroups_2024-Update | |
PSME_00001944-RA | No alias | (at1g11290 : 488.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00003874-RA | No alias | (at4g33170 : 590.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
PSME_00046650-RA | No alias | (at4g21300 : 573.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
Potri.T137000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Seita.2G031700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.2G203900.1 | No alias | RNA editing factor *(OTP87) | 0.02 | Orthogroups_2024-Update | |
Seita.4G216600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.4G225800.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.5G295700.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.7G042500.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
Seita.9G477500.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.002G384800.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sopen01g015270 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen01g033110 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen01g038950 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen11g001910 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen11g002630 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0015095 | magnesium ion transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0015693 | magnesium ion transport | IEP | Predicted GO |
CC | GO:0031011 | Ino80 complex | IEP | Predicted GO |
CC | GO:0033202 | DNA helicase complex | IEP | Predicted GO |
CC | GO:0044454 | nuclear chromosome part | IEP | Predicted GO |
CC | GO:0070603 | SWI/SNF superfamily-type complex | IEP | Predicted GO |
BP | GO:0070838 | divalent metal ion transport | IEP | Predicted GO |
BP | GO:0072511 | divalent inorganic cation transport | IEP | Predicted GO |
CC | GO:0097346 | INO80-type complex | IEP | Predicted GO |
CC | GO:1904949 | ATPase complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 542 | 666 |
IPR002885 | Pentatricopeptide_repeat | 267 | 315 |
IPR002885 | Pentatricopeptide_repeat | 369 | 415 |
IPR002885 | Pentatricopeptide_repeat | 123 | 151 |
IPR002885 | Pentatricopeptide_repeat | 444 | 467 |
IPR002885 | Pentatricopeptide_repeat | 154 | 183 |
IPR002885 | Pentatricopeptide_repeat | 95 | 121 |
IPR002885 | Pentatricopeptide_repeat | 509 | 538 |
No external refs found! |