MA_26316g0010

Description : (at2g22070 : 501.0) pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G25360.1); Has 47939 Blast hits to 14346 proteins in 287 species: Archae - 0; Bacteria - 20; Metazoa - 98; Fungi - 122; Plants - 46979; Viruses - 0; Other Eukaryotes - 720 (source: NCBI BLink). & (q76c99|rf1_orysa : 152.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 960.0) & (original description: no original description)

Gene families : OG_42_0022305 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Picea release: MA_26316g0010
Cluster	HCCA clusters: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method	Actions
PSME_00013113-RA	No alias	(at2g13600 : 498.0) Pentatricopeptide repeat (PPR)...	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0010181	FMN binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	239	265
IPR032867	DYW_dom	687	741
IPR002885	Pentatricopeptide_repeat	344	370
IPR002885	Pentatricopeptide_repeat	212	237
IPR002885	Pentatricopeptide_repeat	141	167
IPR002885	Pentatricopeptide_repeat	372	399
IPR002885	Pentatricopeptide_repeat	114	139
IPR002885	Pentatricopeptide_repeat	589	612
IPR002885	Pentatricopeptide_repeat	47	65
IPR002885	Pentatricopeptide_repeat	400	433
IPR002885	Pentatricopeptide_repeat	514	561
IPR002885	Pentatricopeptide_repeat	269	316

External Links

No external refs found!

MA_26316g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation