Description : (at3g57150 : 683.0) Encodes a putative pseudouridine synthase (NAP57).; homologue of NAP57 (NAP57); FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification, RNA processing; LOCATED IN: cytosol, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), H/ACA ribonucleoprotein complex, subunit Cbf5 (InterPro:IPR004802), Pseudouridine synthase II, TruB, N-terminal (InterPro:IPR002501), Dyskerin-like (InterPro:IPR012960), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT5G14460.1); Has 114172 Blast hits to 55339 proteins in 3754 species: Archae - 551; Bacteria - 17094; Metazoa - 41477; Fungi - 11530; Plants - 5704; Viruses - 752; Other Eukaryotes - 37064 (source: NCBI BLink). & (reliability: 1366.0) & (original description: no original description)
Gene families : OG_42_0004273 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004273_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_27456g0030 | |
Cluster | HCCA clusters: Cluster_216 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi4g38770 | No alias | homologue of NAP57 | 0.02 | Orthogroups_2024-Update | |
Brara.G01728.1 | No alias | pseudouridine synthase component *(Nap57/CBF5) of H/ACA... | 0.05 | Orthogroups_2024-Update | |
GRMZM2G172956 | No alias | homologue of NAP57 | 0.03 | Orthogroups_2024-Update | |
Glyma.15G056100 | No alias | homologue of NAP57 | 0.04 | Orthogroups_2024-Update | |
HORVU2Hr1G027370.1 | No alias | pseudouridine synthase component *(Nap57/CBF5) of H/ACA... | 0.03 | Orthogroups_2024-Update | |
HORVU2Hr1G027400.5 | No alias | pseudouridine synthase component *(Nap57/CBF5) of H/ACA... | 0.05 | Orthogroups_2024-Update | |
Kfl00043_0130 | kfl00043_0130_v1.1 | (at3g57150 : 649.0) Encodes a putative pseudouridine... | 0.03 | Orthogroups_2024-Update | |
Mp4g12650.1 | No alias | pseudouridine synthase component Nap57/CBF5 of H/ACA... | 0.03 | Orthogroups_2024-Update | |
PSME_00057055-RA | No alias | (at3g57150 : 685.0) Encodes a putative pseudouridine... | 0.03 | Orthogroups_2024-Update | |
Potri.006G044100 | No alias | homologue of NAP57 | 0.03 | Orthogroups_2024-Update | |
Seita.2G404800.1 | No alias | pseudouridine synthase component *(Nap57/CBF5) of H/ACA... | 0.03 | Orthogroups_2024-Update | |
Seita.5G057000.1 | No alias | pseudouridine synthase component *(Nap57/CBF5) of H/ACA... | 0.03 | Orthogroups_2024-Update | |
Sopen02g026410 | No alias | DKCLD (NUC011) domain | 0.03 | Orthogroups_2024-Update | |
evm.model.tig00000553.10 | No alias | (at3g57150 : 635.0) Encodes a putative pseudouridine... | 0.01 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | InterProScan predictions |
BP | GO:0006396 | RNA processing | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000096 | sulfur amino acid metabolic process | IEP | Predicted GO |
BP | GO:0000097 | sulfur amino acid biosynthetic process | IEP | Predicted GO |
MF | GO:0003678 | DNA helicase activity | IEP | Predicted GO |
MF | GO:0003871 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity | IEP | Predicted GO |
MF | GO:0003924 | GTPase activity | IEP | Predicted GO |
MF | GO:0003993 | acid phosphatase activity | IEP | Predicted GO |
MF | GO:0004590 | orotidine-5'-phosphate decarboxylase activity | IEP | Predicted GO |
BP | GO:0006206 | pyrimidine nucleobase metabolic process | IEP | Predicted GO |
BP | GO:0006207 | 'de novo' pyrimidine nucleobase biosynthetic process | IEP | Predicted GO |
BP | GO:0006555 | methionine metabolic process | IEP | Predicted GO |
MF | GO:0008047 | enzyme activator activity | IEP | Predicted GO |
MF | GO:0008172 | S-methyltransferase activity | IEP | Predicted GO |
MF | GO:0008483 | transaminase activity | IEP | Predicted GO |
MF | GO:0008536 | Ran GTPase binding | IEP | Predicted GO |
BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | Predicted GO |
BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0009086 | methionine biosynthetic process | IEP | Predicted GO |
BP | GO:0009112 | nucleobase metabolic process | IEP | Predicted GO |
BP | GO:0009892 | negative regulation of metabolic process | IEP | Predicted GO |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0010629 | negative regulation of gene expression | IEP | Predicted GO |
BP | GO:0016458 | gene silencing | IEP | Predicted GO |
MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | Predicted GO |
MF | GO:0016791 | phosphatase activity | IEP | Predicted GO |
MF | GO:0017016 | Ras GTPase binding | IEP | Predicted GO |
MF | GO:0019208 | phosphatase regulator activity | IEP | Predicted GO |
MF | GO:0019211 | phosphatase activator activity | IEP | Predicted GO |
BP | GO:0019856 | pyrimidine nucleobase biosynthetic process | IEP | Predicted GO |
BP | GO:0031047 | gene silencing by RNA | IEP | Predicted GO |
MF | GO:0031267 | small GTPase binding | IEP | Predicted GO |
MF | GO:0042085 | 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity | IEP | Predicted GO |
MF | GO:0042578 | phosphoric ester hydrolase activity | IEP | Predicted GO |
BP | GO:0044272 | sulfur compound biosynthetic process | IEP | Predicted GO |
BP | GO:0046112 | nucleobase biosynthetic process | IEP | Predicted GO |
MF | GO:0051020 | GTPase binding | IEP | Predicted GO |
MF | GO:0051287 | NAD binding | IEP | Predicted GO |
BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Predicted GO |
No external refs found! |