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Description : (at3g53700 : 646.0) maternal effect embryo arrest 40 (MEE40); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G64320.1); Has 58723 Blast hits to 15213 proteins in 321 species: Archae - 6; Bacteria - 72; Metazoa - 992; Fungi - 1450; Plants - 53933; Viruses - 0; Other Eukaryotes - 2270 (source: NCBI BLink). & (q76c99|rf1_orysa : 341.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1292.0) & (original description: no original description)
Gene families : OG_42_0008298 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008298_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_275584g0010 | |
| Cluster | HCCA clusters: Cluster_110 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| GRMZM2G150030 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Seita.9G185600.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004611 | phosphoenolpyruvate carboxykinase activity | IEP | Predicted GO |
| CC | GO:0005737 | cytoplasm | IEP | Predicted GO |
| BP | GO:0006099 | tricarboxylic acid cycle | IEP | Predicted GO |
| BP | GO:0006101 | citrate metabolic process | IEP | Predicted GO |
| BP | GO:0006886 | intracellular protein transport | IEP | Predicted GO |
| MF | GO:0008964 | phosphoenolpyruvate carboxylase activity | IEP | Predicted GO |
| BP | GO:0015977 | carbon fixation | IEP | Predicted GO |
| MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | Predicted GO |
| MF | GO:0016830 | carbon-carbon lyase activity | IEP | Predicted GO |
| MF | GO:0016831 | carboxy-lyase activity | IEP | Predicted GO |
| BP | GO:0016999 | antibiotic metabolic process | IEP | Predicted GO |
| CC | GO:0017119 | Golgi transport complex | IEP | Predicted GO |
| CC | GO:0044431 | Golgi apparatus part | IEP | Predicted GO |
| BP | GO:0072350 | tricarboxylic acid metabolic process | IEP | Predicted GO |
| CC | GO:0099023 | tethering complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 21 | 46 |
| IPR002885 | Pentatricopeptide_repeat | 58 | 84 |
| IPR002885 | Pentatricopeptide_repeat | 504 | 535 |
| IPR002885 | Pentatricopeptide_repeat | 227 | 276 |
| IPR002885 | Pentatricopeptide_repeat | 297 | 346 |
| IPR002885 | Pentatricopeptide_repeat | 438 | 485 |
| IPR002885 | Pentatricopeptide_repeat | 542 | 591 |
| IPR002885 | Pentatricopeptide_repeat | 367 | 416 |
| IPR002885 | Pentatricopeptide_repeat | 157 | 206 |
| IPR002885 | Pentatricopeptide_repeat | 92 | 135 |
| No external refs found! |