MA_28575g0010

Description : (at5g47500 : 447.0) Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G19730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o04887|pme2_citsi : 165.0) Pectinesterase-2 precursor (EC 3.1.1.11) (Pectin methylesterase) (PE) - Citrus sinensis (Sweet orange) & (reliability: 894.0) & (original description: no original description)

Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Picea release: MA_28575g0010
Cluster	HCCA clusters: Cluster_39

Target	Alias	Description	ECC score	Gene Family Method
81583	No alias	Pectin lyase-like superfamily protein	0.03	Orthogroups_2024-Update
A4A49_15905	No alias	putative pectinesterase 8	0.04	Orthogroups_2024-Update
A4A49_38924	No alias	putative pectinesterase 53	0.04	Orthogroups_2024-Update
At2g47280	No alias	Probable pectinesterase 66...	0.04	Orthogroups_2024-Update
At5g07420	No alias	Probable pectinesterase 49...	0.04	Orthogroups_2024-Update
At5g47500	No alias	Probable pectinesterase 68...	0.02	Orthogroups_2024-Update
Brara.F03540.1	No alias	pectin methylesterase	0.03	Orthogroups_2024-Update
Glyma.01G068100	No alias	Pectin lyase-like superfamily protein	0.02	Orthogroups_2024-Update
Glyma.11G032700	No alias	Pectin lyase-like superfamily protein	0.04	Orthogroups_2024-Update
Glyma.17G141700	No alias	Pectin lyase-like superfamily protein	0.05	Orthogroups_2024-Update
Mp3g01170.1	No alias	pectin methylesterase	0.02	Orthogroups_2024-Update
PSME_00015802-RA	No alias	(at5g19730 : 209.0) Pectin lyase-like superfamily...	0.02	Orthogroups_2024-Update
PSME_00020051-RA	No alias	(at5g19730 : 262.0) Pectin lyase-like superfamily...	0.03	Orthogroups_2024-Update
Potri.003G076900	No alias	Pectin lyase-like superfamily protein	0.04	Orthogroups_2024-Update
Potri.014G117100	No alias	Pectin lyase-like superfamily protein	0.03	Orthogroups_2024-Update
Pp1s112_177V6	No alias	pectin methylesterase	0.02	Orthogroups_2024-Update
Pp1s45_249V6	No alias	pectin methylesterase	0.03	Orthogroups_2024-Update
Pp1s461_15V6	No alias	pectin methylesterase	0.02	Orthogroups_2024-Update
Pp1s55_167V6	No alias	pectin methylesterase	0.03	Orthogroups_2024-Update
Pp1s67_89V6	No alias	pectin methylesterase	0.03	Orthogroups_2024-Update
Solyc08g078640	No alias	Pectinesterase (AHRD V3.3 *** K4CNM3_SOLLC)	0.03	Orthogroups_2024-Update
Sopen08g027120	No alias	Pectinesterase	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	InterProScan predictions
BP	GO:0042545	cell wall modification	IEA	InterProScan predictions
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0003677	DNA binding	IEP	Predicted GO
MF	GO:0003916	DNA topoisomerase activity	IEP	Predicted GO
MF	GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity	IEP	Predicted GO
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Predicted GO
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	Predicted GO
MF	GO:0004857	enzyme inhibitor activity	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
CC	GO:0005667	transcription factor complex	IEP	Predicted GO
BP	GO:0005975	carbohydrate metabolic process	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006259	DNA metabolic process	IEP	Predicted GO
BP	GO:0006265	DNA topological change	IEP	Predicted GO
BP	GO:0006270	DNA replication initiation	IEP	Predicted GO
BP	GO:0006275	regulation of DNA replication	IEP	Predicted GO
BP	GO:0006333	chromatin assembly or disassembly	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
MF	GO:0008094	DNA-dependent ATPase activity	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Predicted GO
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	Predicted GO
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Predicted GO
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
BP	GO:0044238	primary metabolic process	IEP	Predicted GO
CC	GO:0044424	intracellular part	IEP	Predicted GO
CC	GO:0044464	cell part	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Predicted GO
BP	GO:0051052	regulation of DNA metabolic process	IEP	Predicted GO
MF	GO:0061505	DNA topoisomerase II activity	IEP	Predicted GO
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	Predicted GO
BP	GO:0071103	DNA conformation change	IEP	Predicted GO
BP	GO:0071704	organic substance metabolic process	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	152	441

External Links

No external refs found!

MA_28575g0010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation