Description : (at3g57430 : 710.0) Encodes a chloroplast RNA editing factor.; ORGANELLE TRANSCRIPT PROCESSING 84 (OTP84); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 46517 Blast hits to 13331 proteins in 240 species: Archae - 0; Bacteria - 7; Metazoa - 55; Fungi - 91; Plants - 45789; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink). & (q76c99|rf1_orysa : 137.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1420.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_30949g0010 | |
Cluster | HCCA clusters: Cluster_77 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At1g06140 | No alias | Pentatricopeptide repeat-containing protein At1g06140,... | 0.03 | Orthogroups_2024-Update | |
Glyma.02G227300 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
PSME_00001944-RA | No alias | (at1g11290 : 488.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00011140-RA | No alias | (at1g11290 : 575.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
PSME_00016653-RA | No alias | (at3g02010 : 685.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00022685-RA | No alias | (at3g46790 : 552.0) Encodes a member of a PCMP (plant... | 0.03 | Orthogroups_2024-Update | |
PSME_00023451-RA | No alias | (at1g11290 : 535.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
PSME_00028519-RA | No alias | (at2g22070 : 606.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00028931-RA | No alias | (at3g25970 : 541.0) Pentatricopeptide repeat (PPR)... | 0.05 | Orthogroups_2024-Update | |
PSME_00037497-RA | No alias | (at4g13650 : 692.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00050906-RA | No alias | (at4g33170 : 629.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00051765-RA | No alias | (at3g03580 : 693.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00056121-RA | No alias | (at4g13650 : 672.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
Potri.003G223900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.014G191200 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Sobic.010G258600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006720 | isoprenoid metabolic process | IEP | Predicted GO |
BP | GO:0006721 | terpenoid metabolic process | IEP | Predicted GO |
BP | GO:0008299 | isoprenoid biosynthetic process | IEP | Predicted GO |
MF | GO:0008685 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity | IEP | Predicted GO |
BP | GO:0016114 | terpenoid biosynthetic process | IEP | Predicted GO |
MF | GO:0016849 | phosphorus-oxygen lyase activity | IEP | Predicted GO |
MF | GO:0033926 | glycopeptide alpha-N-acetylgalactosaminidase activity | IEP | Predicted GO |
MF | GO:0140103 | catalytic activity, acting on a glycoprotein | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 757 | 880 |
IPR002885 | Pentatricopeptide_repeat | 79 | 115 |
IPR002885 | Pentatricopeptide_repeat | 483 | 530 |
IPR002885 | Pentatricopeptide_repeat | 281 | 327 |
IPR002885 | Pentatricopeptide_repeat | 381 | 429 |
IPR002885 | Pentatricopeptide_repeat | 584 | 631 |
IPR002885 | Pentatricopeptide_repeat | 180 | 227 |
IPR002885 | Pentatricopeptide_repeat | 558 | 583 |
IPR002885 | Pentatricopeptide_repeat | 659 | 682 |
No external refs found! |