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  5. MA_316222g0010

MA_316222g0010


Description : (at2g40610 : 383.0) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.; expansin A8 (EXPA8); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A2 (TAIR:AT5G05290.1); Has 2297 Blast hits to 2294 proteins in 186 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 45; Plants - 2187; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). & (p93442|expa4_orysa : 374.0) Expansin-A4 precursor (OsEXPA4) (Alpha-expansin-4) (OsEXP4) (OsaEXPa1.22) - Oryza sativa (Rice) & (reliability: 766.0) & (original description: no original description)


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_316222g0010
Cluster HCCA clusters: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
75237 No alias expansin A7 0.03 Orthogroups_2024-Update
A4A49_04302 No alias expansin-a10 0.04 Orthogroups_2024-Update
A4A49_13869 No alias expansin-a3 0.02 Orthogroups_2024-Update
A4A49_26789 No alias expansin-a3 0.02 Orthogroups_2024-Update
A4A49_61517 No alias expansin-a23 0.03 Orthogroups_2024-Update
At5g39260 No alias Expansin-A21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL81] 0.02 Orthogroups_2024-Update
Bradi5g04120 No alias expansin 11 0.03 Orthogroups_2024-Update
Brara.D00393.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.F03107.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.I01201.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
GRMZM2G094523 No alias expansin A1 0.02 Orthogroups_2024-Update
Glyma.04G167800 No alias expansin A15 0.02 Orthogroups_2024-Update
Glyma.07G229000 No alias expansin A15 0.03 Orthogroups_2024-Update
Glyma.11G160000 No alias expansin A8 0.02 Orthogroups_2024-Update
Glyma.18G265400 No alias expansin A23 0.05 Orthogroups_2024-Update
LOC_Os01g14650 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g60770 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g16839 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_100868g0010 No alias (at2g40610 : 292.0) member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
MA_172610g0010 No alias (at2g40610 : 331.0) member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
MA_30127g0010 No alias (at2g40610 : 411.0) member of Alpha-Expansin Gene... 0.04 Orthogroups_2024-Update
MA_37884g0010 No alias (q40636|expa2_orysa : 400.0) Expansin-A2 precursor... 0.03 Orthogroups_2024-Update
MA_40314g0010 No alias (q40636|expa2_orysa : 396.0) Expansin-A2 precursor... 0.04 Orthogroups_2024-Update
MA_86877g0010 No alias (at1g69530 : 387.0) Member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
Mp2g18610.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Mp8g18860.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
PSME_00009799-RA No alias (at1g26770 : 387.0) Encodes an expansin. Naming... 0.04 Orthogroups_2024-Update
PSME_00018430-RA No alias (at2g40610 : 404.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
PSME_00040125-RA No alias (q40636|expa2_orysa : 389.0) Expansin-A2 precursor... 0.02 Orthogroups_2024-Update
PSME_00045415-RA No alias (at4g01630 : 291.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00050247-RA No alias (at2g40610 : 400.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00050683-RA No alias (q40636|expa2_orysa : 396.0) Expansin-A2 precursor... 0.03 Orthogroups_2024-Update
Potri.002G184700 No alias expansin A17 0.03 Orthogroups_2024-Update
Potri.008G088300 No alias expansin A1 0.02 Orthogroups_2024-Update
Potri.013G154700 No alias expansin A8 0.02 Orthogroups_2024-Update
Potri.017G140000 No alias expansin A13 0.02 Orthogroups_2024-Update
Seita.5G062700.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Seita.7G029300.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Seita.9G032400.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.003G338801.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Sobic.003G444400.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.009G173700.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Sopen04g035500 No alias Pollen allergen 0.02 Orthogroups_2024-Update
Sopen09g010480 No alias Pollen allergen 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
CC GO:0031226 intrinsic component of plasma membrane IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
CC GO:0046658 anchored component of plasma membrane IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 162 239
IPR009009 RlpA-like_DPBB 66 151
No external refs found!