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  5. MA_371071g0010

MA_371071g0010


Description : (at5g03240 : 517.0) encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.; polyubiquitin 3 (UBQ3); INVOLVED IN: protein modification process, response to UV-B, response to light stimulus, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 26684 Blast hits to 7218 proteins in 726 species: Archae - 0; Bacteria - 80; Metazoa - 12490; Fungi - 3021; Plants - 5505; Viruses - 651; Other Eukaryotes - 4937 (source: NCBI BLink). & (p69326|ubiq_wheat : 150.0) Ubiquitin - Triticum aestivum (Wheat) & (reliability: 1034.0) & (original description: no original description)


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_371071g0010
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Bradi1g32700 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
Brara.I02133.1 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
Cre09.g396400 No alias related to ubiquitin 1 0.02 Orthogroups_2024-Update
Glyma.13G138600 No alias ubiquitin 4 0.03 Orthogroups_2024-Update
HORVU6Hr1G014970.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G026260.1 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
Potri.011G134200 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
Potri.017G135600 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
Pp1s46_189V6 No alias polyubiquitin 0.02 Orthogroups_2024-Update
Seita.3G398300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.5G081000.1 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Sobic.002G178700.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G292500.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Sobic.003G403700.1 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Sobic.004G273300.1 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 79 150
IPR000626 Ubiquitin_dom 155 226
IPR000626 Ubiquitin_dom 231 267
IPR000626 Ubiquitin_dom 3 74
No external refs found!