1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_393053g0010

MA_393053g0010


Description : (at3g07490 : 116.0) A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.; ARF-GAP domain 11 (AGD11); FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Parvalbumin (InterPro:IPR008080), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT2G43290.1); Has 25143 Blast hits to 16842 proteins in 1503 species: Archae - 3; Bacteria - 170; Metazoa - 10890; Fungi - 4135; Plants - 6085; Viruses - 0; Other Eukaryotes - 3860 (source: NCBI BLink). & (p43187|allb3_betve : 96.7) Calcium-binding allergen Bet v 3 (Bet v III) - Betula verrucosa (White birch) (Betula pendula) & (reliability: 232.0) & (original description: no original description)


Gene families : OG_42_0000821 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000821_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_393053g0010
Cluster HCCA clusters: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
Potri.002G077300 No alias Calcium-binding EF-hand family protein 0.03 Orthogroups_2024-Update
Sobic.006G131600.1 No alias calcium sensor *(CML) 0.02 Orthogroups_2024-Update
Solyc06g083000 No alias Calcium-binding protein (AHRD V3.3 *** Q9SCA1_LOTJA) 0.03 Orthogroups_2024-Update
Sopen04g026060 No alias EF hand 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
MF GO:0004474 malate synthase activity IEP Predicted GO
BP GO:0006081 cellular aldehyde metabolic process IEP Predicted GO
BP GO:0006097 glyoxylate cycle IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
MF GO:0008198 ferrous iron binding IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0046487 glyoxylate metabolic process IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 74 138
IPR002048 EF_hand_dom 2 56
No external refs found!