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Description : (at3g16720 : 107.0) RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations.; TOXICOS EN LEVADURA 2 (ATL2); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin, defense response; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G15975.1); Has 9711 Blast hits to 9689 proteins in 300 species: Archae - 0; Bacteria - 2; Metazoa - 2552; Fungi - 813; Plants - 5050; Viruses - 85; Other Eukaryotes - 1209 (source: NCBI BLink). & (q9lrb7|el5_orysa : 89.7) E3 ubiquitin-protein ligase EL5 (EC 6.3.2.-) - Oryza sativa (Rice) & (reliability: 214.0) & (original description: no original description)
Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_43543g0010 | |
| Cluster | HCCA clusters: Cluster_240 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_21361 | No alias | ring-h2 finger protein atl78 | 0.03 | Orthogroups_2024-Update | |
| A4A49_40065 | No alias | ring-h2 finger protein atl70 | 0.03 | Orthogroups_2024-Update | |
| At1g33480 | No alias | RING-H2 finger protein ATL58... | 0.04 | Orthogroups_2024-Update | |
| Bradi1g45727 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi2g22650 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Brara.B03540.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Brara.D02285.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.E01886.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.04 | Orthogroups_2024-Update | |
| Brara.G01336.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G460958 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.02G210400 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU2Hr1G074210.1 | No alias | regulatory ubiquitin-protein ligase *(PRU2) | 0.04 | Orthogroups_2024-Update | |
| HORVU7Hr1G080020.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| LOC_Os02g14990 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os05g36310 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os06g34870 | No alias | Zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os12g24490 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| Mp2g11860.1 | No alias | RING-H2-class E3 ligase | 0.02 | Orthogroups_2024-Update | |
| Mp3g00390.1 | No alias | RING-H2-class E3 ligase | 0.02 | Orthogroups_2024-Update | |
| PSME_00054098-RA | No alias | (at3g16720 : 124.0) RING-H2 protein induced after... | 0.04 | Orthogroups_2024-Update | |
| Potri.005G036800 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.006G144200 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.014G043200 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Seita.1G203900.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.04 | Orthogroups_2024-Update | |
| Seita.3G023500.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G187800.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.04 | Orthogroups_2024-Update | |
| Sobic.005G012100.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Solyc09g010650 | No alias | RING/U-box superfamily protein (AHRD V3.3 *-* AT2G37580.1) | 0.03 | Orthogroups_2024-Update | |
| Solyc12g087860 | No alias | RING/U-box superfamily protein, putative (AHRD V3.3 ***... | 0.06 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000159 | protein phosphatase type 2A complex | IEP | Predicted GO |
| CC | GO:0005694 | chromosome | IEP | Predicted GO |
| BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
| BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
| BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
| CC | GO:0008287 | protein serine/threonine phosphatase complex | IEP | Predicted GO |
| BP | GO:0009451 | RNA modification | IEP | Predicted GO |
| MF | GO:0019208 | phosphatase regulator activity | IEP | Predicted GO |
| MF | GO:0019888 | protein phosphatase regulator activity | IEP | Predicted GO |
| BP | GO:0034227 | tRNA thio-modification | IEP | Predicted GO |
| BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
| BP | GO:0051276 | chromosome organization | IEP | Predicted GO |
| CC | GO:1903293 | phosphatase complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001841 | Znf_RING | 107 | 150 |
| No external refs found! |