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MA_46617g0010


Description : (at5g03240 : 212.0) encodes ubiquitin that is attached to proteins destined for degradation. UBQ3 is most homologous with UBQ4, and is expressed in higher levels in vegetative tissue but lower levels in flowers than UBQ4. UBQ3 encodes different number of ubiquitins in different ecotypes. UBQ3 transcript level is modulated by UV-B and light/dark treatments.; polyubiquitin 3 (UBQ3); INVOLVED IN: protein modification process, response to UV-B, response to light stimulus, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 4 (TAIR:AT5G20620.1); Has 26684 Blast hits to 7218 proteins in 726 species: Archae - 0; Bacteria - 80; Metazoa - 12490; Fungi - 3021; Plants - 5505; Viruses - 651; Other Eukaryotes - 4937 (source: NCBI BLink). & (p69326|ubiq_wheat : 122.0) Ubiquitin - Triticum aestivum (Wheat) & (reliability: 424.0) & (original description: no original description)


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Picea release: MA_46617g0010
Cluster HCCA clusters: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Cre13.g563600 No alias polyubiquitin 10 0.01 Orthogroups_2024-Update
Glyma.13G117700 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
Glyma.13G117900 No alias polyubiquitin 10 0.04 Orthogroups_2024-Update
HORVU7Hr1G103550.4 No alias UBQ ubiquitin-fold protein 0.04 Orthogroups_2024-Update
LOC_Os05g06770 No alias 40S ribosomal protein S27a, putative, expressed 0.02 Orthogroups_2024-Update
Potri.005G011700 No alias ubiquitin 9 0.03 Orthogroups_2024-Update
Seita.3G398300.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 84 151
IPR000626 Ubiquitin_dom 4 68
No external refs found!