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Description : (at3g12770 : 471.0) Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.; mitochondrial editing factor 22 (MEF22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 43523 Blast hits to 14475 proteins in 290 species: Archae - 0; Bacteria - 15; Metazoa - 148; Fungi - 158; Plants - 42447; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink). & (q76c99|rf1_orysa : 102.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 942.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_474261g0010 | |
| Cluster | HCCA clusters: Cluster_21 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 105197 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| A4A49_26813 | No alias | putative pentatricopeptide repeat-containing protein,... | 0.03 | Orthogroups_2024-Update | |
| A4A49_38131 | No alias | pentatricopeptide repeat-containing protein | 0.04 | Orthogroups_2024-Update | |
| At1g06140 | No alias | Pentatricopeptide repeat-containing protein At1g06140,... | 0.04 | Orthogroups_2024-Update | |
| At1g74600 | No alias | Pentatricopeptide repeat-containing protein At1g74600,... | 0.03 | Orthogroups_2024-Update | |
| At3g20730 | No alias | Pentatricopeptide repeat-containing protein At3g20730... | 0.04 | Orthogroups_2024-Update | |
| At4g21300 | No alias | Pentatricopeptide repeat-containing protein At4g21300... | 0.02 | Orthogroups_2024-Update | |
| At5g40410 | No alias | Pentatricopeptide repeat-containing protein At5g40410,... | 0.03 | Orthogroups_2024-Update | |
| Bradi1g36010 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Brara.B00951.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Glyma.02G227300 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.07G029000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
| Glyma.12G146900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| HORVU7Hr1G030840.1 | No alias | RNA editing factor *(MEF29) | 0.03 | Orthogroups_2024-Update | |
| MA_68707g0010 | No alias | (at3g24000 : 546.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
| PSME_00003038-RA | No alias | (at1g11290 : 364.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
| PSME_00005903-RA | No alias | (at2g22070 : 612.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00008750-RA | No alias | (at1g15510 : 464.0) Encodes a pentatricopeptide repeat... | 0.04 | Orthogroups_2024-Update | |
| PSME_00012885-RA | No alias | (at1g08070 : 603.0) Encodes a chloroplast RNA editing... | 0.06 | Orthogroups_2024-Update | |
| PSME_00016831-RA | No alias | (at3g12770 : 618.0) Encodes a pentatricopeptide repeat... | 0.05 | Orthogroups_2024-Update | |
| PSME_00017380-RA | No alias | (at2g27610 : 683.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
| PSME_00039409-RA | No alias | (at4g18750 : 537.0) Encodes a pentatricopeptide (PPR)... | 0.05 | Orthogroups_2024-Update | |
| PSME_00046347-RA | No alias | (at2g13600 : 438.0) Pentatricopeptide repeat (PPR)... | 0.08 | Orthogroups_2024-Update | |
| PSME_00047081-RA | No alias | (at1g18485 : 652.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00051747-RA | No alias | (at1g11290 : 641.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
| PSME_00056779-RA | No alias | (at4g13650 : 709.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| PSME_00057058-RA | No alias | (at3g12770 : 592.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
| PSME_00057114-RA | No alias | (at4g21300 : 528.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005488 | binding | IEP | Predicted GO |
| MF | GO:0008081 | phosphoric diester hydrolase activity | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| No external refs found! |