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  5. MA_475294g0010

MA_475294g0010


Description : (at5g65360 : 226.0) Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p68428|h32_wheat : 224.0) Histone H3.2 - Triticum aestivum (Wheat) & (reliability: 452.0) & (original description: no original description)


Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_475294g0010
Cluster HCCA clusters: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
A4A49_57080 No alias histone h3.2 0.02 Orthogroups_2024-Update
A4A49_61103 No alias histone h3.2 0.02 Orthogroups_2024-Update
At1g09200 No alias Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20] 0.03 Orthogroups_2024-Update
Cre06.g264650 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Cre06.g265250 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g267950 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g274850 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g276600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g276850 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g504650 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g504800 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g506300 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g506500 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre17.g708150 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre17.g708700 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre17.g709050 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G078314 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G130079 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G171387 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G179005 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G355773 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G418258 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G245000 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G241800 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.12G055200 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G073670.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
HORVU2Hr1G074240.4 No alias histone *(H3) 0.04 Orthogroups_2024-Update
HORVU7Hr1G012820.2 No alias histone *(H3) 0.02 Orthogroups_2024-Update
HORVU7Hr1G034470.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Kfl00940_0030 kfl00940_0030_v1.1 (p08437|h3_volca : 124.0) Histone H3 - Volvox carteri &... 0.03 Orthogroups_2024-Update
MA_350032g0010 No alias (at5g10980 : 266.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update
Mp7g10730.1 No alias histone (H3) 0.03 Orthogroups_2024-Update
Mp7g16200.1 No alias histone (H3) 0.02 Orthogroups_2024-Update
PSME_00041692-RA No alias (at5g10980 : 139.0) Histone superfamily protein;... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 3 134
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