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Description : (at5g12330 : 144.0) A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.; LATERAL ROOT PRIMORDIUM 1 (LRP1); FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: response to auxin stimulus, root development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Protein of unknown function DUF702 (InterPro:IPR007818), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2). & (reliability: 288.0) & (original description: no original description)
Gene families : OG_42_0000655 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000655_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Picea release: MA_53545g0010 | |
| Cluster | HCCA clusters: Cluster_85 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Brara.I03709.1 | No alias | SRS-type transcription factor | 0.03 | Orthogroups_2024-Update | |
| Glyma.15G235000 | No alias | Lateral root primordium (LRP) protein-related | 0.03 | Orthogroups_2024-Update | |
| Glyma.17G255000 | No alias | SHI-related sequence 7 | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004329 | formate-tetrahydrofolate ligase activity | IEP | Predicted GO |
| BP | GO:0006576 | cellular biogenic amine metabolic process | IEP | Predicted GO |
| BP | GO:0006810 | transport | IEP | Predicted GO |
| BP | GO:0009309 | amine biosynthetic process | IEP | Predicted GO |
| MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | Predicted GO |
| MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | Predicted GO |
| MF | GO:0030410 | nicotianamine synthase activity | IEP | Predicted GO |
| BP | GO:0030417 | nicotianamine metabolic process | IEP | Predicted GO |
| BP | GO:0030418 | nicotianamine biosynthetic process | IEP | Predicted GO |
| BP | GO:0042401 | cellular biogenic amine biosynthetic process | IEP | Predicted GO |
| BP | GO:0044106 | cellular amine metabolic process | IEP | Predicted GO |
| BP | GO:0051179 | localization | IEP | Predicted GO |
| BP | GO:0051234 | establishment of localization | IEP | Predicted GO |
| BP | GO:0072350 | tricarboxylic acid metabolic process | IEP | Predicted GO |
| BP | GO:0072351 | tricarboxylic acid biosynthetic process | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |