Description : (at5g08139 : 94.4) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G60820.1); Has 9271 Blast hits to 9218 proteins in 288 species: Archae - 4; Bacteria - 19; Metazoa - 2506; Fungi - 730; Plants - 4517; Viruses - 59; Other Eukaryotes - 1436 (source: NCBI BLink). & (reliability: 188.8) & (original description: no original description)
Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_61067g0010 | |
Cluster | HCCA clusters: Cluster_168 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Brara.G00930.1 | No alias | E3 ubiquitin ligase *(SNIPER) | 0.03 | Orthogroups_2024-Update | |
GRMZM2G164358 | No alias | RING-H2 finger C1A | 0.02 | Orthogroups_2024-Update | |
MA_474338g0010 | No alias | (at2g39720 : 83.2) Encodes a putative RING-H2 finger... | 0.04 | Orthogroups_2024-Update | |
MA_9328282g0010 | No alias | (at5g01980 : 161.0) RING/U-box superfamily protein;... | 0.04 | Orthogroups_2024-Update | |
Seita.8G172700.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.8G172800.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005102 | signaling receptor binding | IEP | Predicted GO |
BP | GO:0006333 | chromatin assembly or disassembly | IEP | Predicted GO |
MF | GO:0008083 | growth factor activity | IEP | Predicted GO |
BP | GO:0008283 | cell proliferation | IEP | Predicted GO |
MF | GO:0030545 | receptor regulator activity | IEP | Predicted GO |
MF | GO:0048018 | receptor ligand activity | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001841 | Znf_RING | 327 | 368 |
No external refs found! |