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Description : Pentatricopeptide repeat superfamily protein (AHRD V3.3 *** A0A061EY03_THECC)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc10g080220 | |
| Cluster | HCCA clusters: Cluster_236 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At3g14730 | No alias | Pentatricopeptide repeat-containing protein At3g14730... | 0.02 | Orthogroups_2024-Update | |
| Bradi1g38705 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi2g45110 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi3g37252 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Brara.C02021.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Brara.E00200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.F03480.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Brara.F03861.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Brara.H01226.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Brara.I02594.1 | No alias | Unknown function | 0.01 | Orthogroups_2024-Update | |
| Brara.J02108.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G175253 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.01G180600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.03G205100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.05G244300 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.07G173900 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.07G226200 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.08G086500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.08G291800 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.10G190600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.12G102800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.12G239300 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.13G313200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.16G206000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.17G175800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G040610.4 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| HORVU5Hr1G124580.1 | No alias | Unknown function | 0.01 | Orthogroups_2024-Update | |
| PSME_00011210-RA | No alias | (at1g15510 : 705.0) Encodes a pentatricopeptide repeat... | 0.02 | Orthogroups_2024-Update | |
| PSME_00036148-RA | No alias | (at2g22070 : 583.0) pentatricopeptide (PPR)... | 0.02 | Orthogroups_2024-Update | |
| Potri.001G019500 | No alias | SLOW GROWTH 1 | 0.03 | Orthogroups_2024-Update | |
| Potri.001G217600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.001G243800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Potri.001G322100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
| Potri.002G075200 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.004G043400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.004G059400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.006G105700 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.006G245300 | No alias | Function unknown | 0.03 | Orthogroups_2024-Update | |
| Potri.018G067500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Seita.3G137300.1 | No alias | RNA editing factor *(ECB2/VAC1) | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G347100.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.001G436600.3 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.002G200500.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.002G385200.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.004G266300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sopen00g008750 | No alias | PPR repeat | 0.05 | Orthogroups_2024-Update | |
| Sopen01g002910 | No alias | PPR repeat | 0.06 | Orthogroups_2024-Update | |
| Sopen01g006160 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
| Sopen01g033110 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
| Sopen01g036300 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen01g038950 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen01g041280 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen01g052200 | No alias | PPR repeat family | 0.05 | Orthogroups_2024-Update | |
| Sopen02g025050 | No alias | PPR repeat family | 0.06 | Orthogroups_2024-Update | |
| Sopen02g033370 | No alias | PPR repeat family | 0.07 | Orthogroups_2024-Update | |
| Sopen02g039140 | No alias | PPR repeat | 0.05 | Orthogroups_2024-Update | |
| Sopen03g002990 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update | |
| Sopen03g011150 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
| Sopen03g024500 | No alias | PPR repeat | 0.06 | Orthogroups_2024-Update | |
| Sopen03g034990 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen03g038010 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen04g008620 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen04g026710 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen04g036510 | No alias | PPR repeat family | 0.05 | Orthogroups_2024-Update | |
| Sopen06g022100 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen06g024560 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen06g035950 | No alias | PPR repeat family | 0.06 | Orthogroups_2024-Update | |
| Sopen07g001950 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
| Sopen09g035030 | No alias | PPR repeat family | 0.05 | Orthogroups_2024-Update | |
| Sopen10g004410 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen11g001900 | No alias | PPR repeat | 0.05 | Orthogroups_2024-Update | |
| Sopen11g001910 | No alias | PPR repeat family | 0.06 | Orthogroups_2024-Update | |
| Sopen11g002630 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen11g009180 | No alias | PPR repeat | 0.04 | Orthogroups_2024-Update | |
| Sopen11g026910 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update | |
| Sopen12g021390 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen12g032510 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000178 | exosome (RNase complex) | IEP | Predicted GO |
| BP | GO:0000226 | microtubule cytoskeleton organization | IEP | Predicted GO |
| CC | GO:0000786 | nucleosome | IEP | Predicted GO |
| CC | GO:0000922 | spindle pole | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003677 | DNA binding | IEP | Predicted GO |
| MF | GO:0003684 | damaged DNA binding | IEP | Predicted GO |
| MF | GO:0003906 | DNA-(apurinic or apyrimidinic site) endonuclease activity | IEP | Predicted GO |
| MF | GO:0003950 | NAD+ ADP-ribosyltransferase activity | IEP | Predicted GO |
| MF | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | IEP | Predicted GO |
| CC | GO:0005634 | nucleus | IEP | Predicted GO |
| CC | GO:0005815 | microtubule organizing center | IEP | Predicted GO |
| BP | GO:0006259 | DNA metabolic process | IEP | Predicted GO |
| BP | GO:0006289 | nucleotide-excision repair | IEP | Predicted GO |
| BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
| BP | GO:0006325 | chromatin organization | IEP | Predicted GO |
| BP | GO:0006334 | nucleosome assembly | IEP | Predicted GO |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Predicted GO |
| BP | GO:0006471 | protein ADP-ribosylation | IEP | Predicted GO |
| BP | GO:0007020 | microtubule nucleation | IEP | Predicted GO |
| BP | GO:0016043 | cellular component organization | IEP | Predicted GO |
| BP | GO:0016571 | histone methylation | IEP | Predicted GO |
| MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | Predicted GO |
| MF | GO:0016728 | oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor | IEP | Predicted GO |
| MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Predicted GO |
| MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Predicted GO |
| MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Predicted GO |
| BP | GO:0018022 | peptidyl-lysine methylation | IEP | Predicted GO |
| BP | GO:0022607 | cellular component assembly | IEP | Predicted GO |
| MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
| CC | GO:0032993 | protein-DNA complex | IEP | Predicted GO |
| CC | GO:0033588 | Elongator holoenzyme complex | IEP | Predicted GO |
| BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Predicted GO |
| BP | GO:0034728 | nucleosome organization | IEP | Predicted GO |
| BP | GO:0034968 | histone lysine methylation | IEP | Predicted GO |
| MF | GO:0043015 | gamma-tubulin binding | IEP | Predicted GO |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Predicted GO |
| CC | GO:0044427 | chromosomal part | IEP | Predicted GO |
| CC | GO:0044815 | DNA packaging complex | IEP | Predicted GO |
| MF | GO:0061731 | ribonucleoside-diphosphate reductase activity | IEP | Predicted GO |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Predicted GO |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | Predicted GO |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predicted GO |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Predicted GO |
| CC | GO:1905354 | exoribonuclease complex | IEP | Predicted GO |
| No external refs found! |